Ludovic Cottret
Ludovic Cottret
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The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
H Badouin, J Gouzy, CJ Grassa, F Murat, SE Staton, L Cottret, ...
Nature 546 (7656), 148-152, 2017
3952017
An integrated analysis of plant and bacterial gene expression in symbiotic root nodules using laser‐capture microdissection coupled to RNA sequencing
B Roux, N Rodde, MF Jardinaud, T Timmers, L Sauviac, L Cottret, ...
The Plant Journal 77 (6), 817-837, 2014
3422014
The Rosa genome provides new insights into the domestication of modern roses
O Raymond, J Gouzy, J Just, H Badouin, M Verdenaud, A Lemainque, ...
Nature genetics 50 (6), 772-777, 2018
1942018
An introduction to metabolic networks and their structural analysis
V Lacroix, L Cottret, P Thébault, MF Sagot
IEEE/ACM transactions on computational biology and bioinformatics 5 (4), 594-617, 2008
1772008
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks
L Cottret, D Wildridge, F Vinson, MP Barrett, H Charles, MF Sagot, ...
Nucleic acids research 38 (suppl_2), W132-W137, 2010
1712010
A Resource Allocation Trade-Off between Virulence and Proliferation Drives Metabolic Versatility in the Plant Pathogen Ralstonia solanacearum
R Peyraud, L Cottret, L Marmiesse, J Gouzy, S Genin
PLoS pathogens 12 (10), e1005939, 2016
942016
Reprogramming of DNA methylation is critical for nodule development in Medicago truncatula
C Satge, S Moreau, E Sallet, G Lefort, MC Auriac, C Rembliere, L Cottret, ...
Nature plants 2 (11), 1-10, 2016
892016
A Laser Dissection-RNAseq Analysis Highlights the Activation of Cytokinin Pathways by Nod Factors in the Medicago truncatula Root Epidermis  
MF Jardinaud, S Boivin, N Rodde, O Catrice, A Kisiala, A Lepage, ...
Plant physiology 171 (3), 2256-2276, 2016
882016
Transcriptome database resource and gene expression atlas for the rose
A Dubois, S Carrere, O Raymond, B Pouvreau, L Cottret, A Roccia, ...
BMC genomics 13 (1), 1-12, 2012
702012
Metabolic network visualization eliminating node redundance and preserving metabolic pathways
R Bourqui, L Cottret, V Lacroix, D Auber, P Mary, MF Sagot, F Jourdan
BMC systems biology 1 (1), 1-19, 2007
652007
MetExplore: collaborative edition and exploration of metabolic networks
L Cottret, C Frainay, M Chazalviel, F Cabanettes, Y Gloaguen, ...
Nucleic acids research 46 (W1), W495-W502, 2018
642018
Systemic analysis of the symbiotic function of Buchnera aphidicola, the primary endosymbiont of the pea aphid Acyrthosiphon pisum
L Brinza, J Viñuelas, L Cottret, F Calevro, Y Rahbé, G Febvay, G Duport, ...
Comptes rendus biologies 332 (11), 1034-1049, 2009
492009
Deciphering the connectivity structure of biological networks using MixNet
F Picard, V Miele, JJ Daudin, L Cottret, S Robin
BMC bioinformatics 10 (6), 1-11, 2009
492009
A genomic reappraisal of symbiotic function in the aphid/Buchnera symbiosis: reduced transporter sets and variable membrane organisations
H Charles, S Balmand, A Lamelas, L Cottret, V Pérez-Brocal, B Burdin, ...
PLoS One 6 (12), e29096, 2011
452011
A genomic reappraisal of symbiotic function in the aphid/Buchnera symbiosis: reduced transporter sets and variable membrane organisations
H Charles, S Balmand, A Lamelas, L Cottret, V Pérez-Brocal, B Burdin, ...
PLoS One 6 (12), e29096, 2011
452011
Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, Baumannia cicadellinicola and Sulcia muelleri, with Their Insect Host …
L Cottret, PV Milreu, V Acuña, A Marchetti-Spaccamela, L Stougie, ...
PLoS computational biology 6 (9), e1000904, 2010
442010
An ancestral signalling pathway is conserved in intracellular symbioses-forming plant lineages
GV Radhakrishnan, J Keller, MK Rich, T Vernié, DLM Mbadinga, ...
Nature plants 6 (3), 280-289, 2020
412020
FlexFlux: combining metabolic flux and regulatory network analyses
L Marmiesse, R Peyraud, L Cottret
BMC systems biology 9 (1), 1-13, 2015
412015
LysM receptor-like kinase and LysM receptor-like protein families: an update on phylogeny and functional characterization
L Buendia, A Girardin, T Wang, L Cottret, B Lefebvre
Frontiers in plant science 9, 1531, 2018
402018
Use of reconstituted metabolic networks to assist in metabolomic data visualization and mining
F Jourdan, L Cottret, L Huc, D Wildridge, R Scheltema, A Hillenweck, ...
Metabolomics 6 (2), 312-321, 2010
352010
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