Stefano Beretta
Stefano Beretta
San Raffaele Telethon Institute for Gene Therapy
Adresse e-mail validée de hsr.it - Page d'accueil
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Precise gene editing preserves hematopoietic stem cell function following transient p53-mediated DNA damage response
G Schiroli, A Conti, S Ferrari, L Della Volpe, A Jacob, L Albano, S Beretta, ...
Cell stem cell 24 (4), 551-565. e8, 2019
492019
HIV-1-mediated insertional activation of STAT5B and BACH2 trigger viral reservoir in T regulatory cells
D Cesana, FRS de Sio, L Rudilosso, P Gallina, A Calabria, S Beretta, ...
Nature communications 8 (1), 1-11, 2017
342017
Further steps in TANGO: improved taxonomic assignment in metagenomics
D Alonso-Alemany, A Barré, S Beretta, P Bonizzoni, M Nikolski, ...
Bioinformatics 30 (1), 17-23, 2014
202014
Modeling alternative splicing variants from RNA-Seq data with isoform graphs
S Beretta, P Bonizzoni, GD Vedova, Y Pirola, R Rizzi
Journal of Computational Biology 21 (1), 16-40, 2014
182014
Learning the structure of Bayesian Networks: A quantitative assessment of the effect of different algorithmic schemes
S Beretta, M Castelli, I Gonçalves, R Henriques, D Ramazzotti
Complexity 2018, 2018
12*2018
Parameterized tractability of the maximum-duo preservation string mapping problem
S Beretta, M Castelli, R Dondi
Theoretical Computer Science 646, 16-25, 2016
122016
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events
L Denti, R Rizzi, S Beretta, G Della Vedova, M Previtali, P Bonizzoni
BMC bioinformatics 19 (1), 444, 2018
112018
Covering pairs in directed acyclic graphs
N Beerenwinkel, S Beretta, P Bonizzoni, R Dondi, Y Pirola
International Conference on Language and Automata Theory and Applications …, 2014
102014
A hybrid genetic algorithm for the repetition free longest common subsequence problem
M Castelli, S Beretta, L Vanneschi
Operations Research Letters 41 (6), 644-649, 2013
102013
Mapping RNA-seq data to a transcript graph via approximate pattern matching to a hypertext
S Beretta, P Bonizzoni, L Denti, M Previtali, R Rizzi
International Conference on Algorithms for Computational Biology, 49-61, 2017
92017
VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites
G Spinozzi, A Calabria, S Brasca, S Beretta, I Merelli, L Milanesi, ...
BMC bioinformatics 18 (1), 520, 2017
82017
Covering Pairs in Directed Acyclic Graphs
N Beerenwinkel, S Beretta, P Bonizzoni, R Dondi, Y Pirola
The Computer Journal 58 (7), 1673-1686, 2015
72015
HapCHAT: Adaptive haplotype assembly for efficiently leveraging high coverage in long reads
S Beretta, MD Patterson, S Zaccaria, G Della Vedova, P Bonizzoni
BMC bioinformatics 19 (1), 252, 2018
52018
SPIRE, a modular pipeline for eQTL analysis of RNA-Seq data, reveals a regulatory hotspot controlling miRNA expression in C. elegans
I Kel, Z Chang, N Galluccio, M Romeo, S Beretta, L Diomede, A Mezzelani, ...
Molecular BioSystems 12 (11), 3447-3458, 2016
42016
Reconstructing isoform graphs from RNA-Seq data
S Beretta, P Bonizzoni, R Rizzi, G Della Vedova
2012 IEEE International Conference on Bioinformatics and Biomedicine, 1-4, 2012
42012
Efficient gene editing of human long-term hematopoietic stem cells validated by clonal tracking
S Ferrari, A Jacob, S Beretta, G Unali, L Albano, V Vavassori, D Cittaro, ...
Nature Biotechnology, 1-11, 2020
32020
Combining Bayesian approaches and evolutionary techniques for the inference of breast cancer networks
S Beretta, M Castelli, I Gonçalves, I Merelli, D Ramazzotti
arXiv preprint arXiv:1703.03041, 2017
32017
Corrigendum to “Parameterized tractability of the maximum-duo preservation string mapping problem”[Theoret. Comput. Sci. 646 (2016) 16–25]
S Beretta, M Castelli, R Dondi
Theoretical Computer Science 653, 108-110, 2016
32016
A machine learning approach for the integration of mirna-target predictions
S Beretta, M Castelli, Y Martínez, L Muñoz, S Silva, L Trujillo, L Milanesi, ...
2016 24th Euromicro International Conference on Parallel, Distributed, and …, 2016
32016
Gene tree correction by leaf removal and modification: Tractability and approximability
S Beretta, R Dondi
Conference on Computability in Europe, 42-52, 2014
32014
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