Artem Lysenko
Artem Lysenko
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Transcriptome and metabolite profiling of the infection cycle of Zymoseptoria tritici on wheat reveals a biphasic interaction with plant immunity involving differential …
JJ Rudd, K Kanyuka, K Hassani-Pak, M Derbyshire, A Andongabo, ...
Plant physiology 167 (3), 1158-1185, 2015
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen
MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ...
Nature Communications 10 (2674), 2019
Assessment of network module identification across complex diseases
S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ...
Nature Methods 16, 843–852, 2019
Representing and querying disease networks using graph databases
A Lysenko, IA Roznovăţ, M Saqi, A Mazein, CJ Rawlings, C Auffray
BioData mining 9 (1), 1-19, 2016
Developing integrated crop knowledge networks to advance candidate gene discovery
K Hassani-Pak, M Castellote, M Esch, M Hindle, A Lysenko, J Taubert, ...
Applied & Translational Genomics 11, 18-26, 2016
Data integration for plant genomics—exemplars from the integration of Arabidopsis thaliana databases
A Lysenko, MM Hindle, J Taubert, M Saqi, CJ Rawlings
Briefings in Bioinformatics 10 (6), 676-693, 2009
Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologues
N Graham, J Hammond, A Lysenko, S Mayes, S Ó Lochlainn, B Blasco, ...
Plant Cell, 2014
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
A Lysenko, M Defoin-Platel, K Hassani-Pak, J Taubert, C Hodgman, ...
BMC Bioinformatics 12 (1), 203, 2011
Network-Based Data Integration for Selecting Candidate Virulence Associated Proteins in the Cereal Infecting Fungus Fusarium graminearum
A Lysenko, M Urban, L Bennett, S Tsoka, E Janowska-Sejda, ...
PLOS One 8 (7), e67926, 2013
EpiGeNet: a graph database of interdependencies between genetic and epigenetic events in colorectal cancer
I Balaur, M Saqi, A Barat, A Lysenko, A Mazein, CJ Rawlings, HJ Ruskin, ...
Journal of Computational Biology 24 (10), 969-980, 2017
Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks
I Balaur, A Mazein, M Saqi, A Lysenko, CJ Rawlings, C Auffray
Bioinformatics 33 (7), 1096-1098, 2017
An integrative machine learning approach for prediction of toxicity-related drug safety
A Lysenko, A Sharma, KA Boroevich, T Tsunoda
Life science alliance 1 (6), 2018
A novel approach to identify genes that determine grain protein deviation in cereals
EF Mosleth, Y Wan, A Lysenko, GA Chope, SP Penson, PR Shewry, ...
Plant biotechnology journal 13 (5), 625-635, 2015
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures
M Saqi, A Lysenko, YK Guo, T Tsunoda, C Auffray
Briefings in bioinformatics 20 (2), 609-623, 2019
Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease
MJ Mason, C Schinke, CLP Eng, F Towfic, F Gruber, A Dervan, BS White, ...
Leukemia 34 (7), 1866-1874, 2020
Graph-based sequence annotation using a data integration approach
R Pesch, A Lysenko, MM Hindle, K Hassani-Pak, R Thiele, CJ Rawlings, ...
Journal of Integrative Bioinformatics 5 (2), 94, 2008
Discovering study-specific gene regulatory networks
V Bo, T Curtis, A Lysenko, M Saqi, S Swift, A Tucker
PLoS One 9 (9), e106524, 2014
AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations
M Defoin-Platel, MM Hindle, A Lysenko, SJ Powers, DZ Habash, ...
BMC Bioinformatics 12 (1), 431, 2011
Detection of multi-clustered genes and community structure for the plant pathogenic fungus Fusarium graminearum
L Bennett, A Lysenko, LG Papageorgiou, M Urban, K Hammond-Kosack, ...
Lecture Notes in Computer Science, CMSB 2012, 69-86, 2012
HseSUMO: Sumoylation site prediction using half-sphere exposures of amino acids residues
A Sharma, A Lysenko, Y López, A Dehzangi, R Sharma, H Reddy, ...
BMC genomics 19 (9), 1-7, 2019
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