John Quackenbush

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193 articles

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Benjamin Haibe-KainsScientist (Principal Investigator), Princess Margaret Cancer Centre, University Health NetworkAdresse e-mail validée de uhnresearch.ca
Joseph A. WhiteDana-Farber Cancer InstituteAdresse e-mail validée de jimmy.harvard.edu
Hugo AertsDirector AI in Medicine (AIM) @ Harvard-MGB | Professor @ MaastrichtUAdresse e-mail validée de dfci.harvard.edu
Kimberly GlassAssociate Scientist, Brigham and Women's Hospital; Assistant Professor of Medicine, Harvard MedicalAdresse e-mail validée de channing.harvard.edu
Alvis BrazmaSenior Scientist, European Bioinformatics Institute, EMBLAdresse e-mail validée de ebi.ac.uk
Aedin CulhaneUniversity of Limerick School of MedicineAdresse e-mail validée de ul.ie
Razvan SultanaBioinformatician, Garvan Institute, Sydney, AustraliaAdresse e-mail validée de garvan.org.au
Christian StoeckertReseach Professor of Genetics, University of PennsylvaniaAdresse e-mail validée de upenn.edu
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentAdresse e-mail validée de jhu.edu
Helen CaustonColumbia UniversityAdresse e-mail validée de cumc.columbia.edu
Helen ParkinsonEuropean Bioinformatics Institute - Head of Knowledge Management Section, Team LeaderAdresse e-mail validée de ebi.ac.uk
marieke kuijjerUniversity of OsloAdresse e-mail validée de ncmm.uio.no
Ronald TaylorSupervisory Biologist (Bioinformatics) at the National Cancer InstituteAdresse e-mail validée de nih.gov
Paul SpellmanOregon Health & Sciences UniversityAdresse e-mail validée de ohsu.edu
Chintan ParmarPathAI (Current) | [Novartis, Harvard-DFCI-BWH, ISI-Kolkata] (Previous)Adresse e-mail validée de dfci.harvard.edu
Gavin SherlockProfessor of Genetics, Stanford UniversityAdresse e-mail validée de stanford.edu
Ed SilvermanAdresse e-mail validée de channing.harvard.edu
Eleanor A HoweDiamond Age Data ScienceAdresse e-mail validée de diamondagedatascience.com
John PlatigInstructor - Brigham and Women's Hospital and Harvard Medical SchoolAdresse e-mail validée de channing.harvard.edu
Gianluca BontempiUniversité Libre de BruxellesAdresse e-mail validée de ulb.ac.be

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John Quackenbush

Harvard T.H. Chan School of Public Health, Channing Division of Network Medicine, and Dana-Farber

Adresse e-mail validée de hsph.harvard.edu

Genomics Bioinformatics Computational Biology Functional Genomics Cancer Genomics


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana Arabidopsis Genome Initiative genomeanalysis@ tgr. org genomeanalysis@ gsf. de nature 408 (6814), 796-815, 2000	10660	2000
TM4: a free, open-source system for microarray data management and analysis AI Saeed, V Sharov, J White, J Li, W Liang, N Bhagabati, J Braisted, ... Biotechniques 34 (2), 374-378, 2003	5234	2003
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ... Nature genetics 29 (4), 365-371, 2001	4739	2001
The complete genome sequence of the gastric pathogen Helicobacter pylori JF Tomb, O White, AR Kerlavage, RA Clayton, GG Sutton, ... Nature 388 (6642), 539-547, 1997	4237	1997
Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach HJWL Aerts, ER Velazquez, RTH Leijenaar, C Parmar, P Grossmann, ... Nature communications 5 (1), 4006, 2014	3907	2014
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	3838	2005
Microarray data normalization and transformation J Quackenbush Nature genetics 32 (4), 496-501, 2002	2727	2002
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi CM Fraser, S Casjens, WM Huang, GG Sutton, R Clayton, R Lathigra, ... Nature 390 (6660), 580-586, 1997	2527	1997
Computational analysis of microarray data J Quackenbush Nature reviews genetics 2 (6), 418-427, 2001	2170	2001
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs RIKEN Genome Exploration Research Group Phase I Team: Carninci P. 2 Hayatsu ... Nature 420 (6915), 563-573, 2002	2036	2002
Genesis: cluster analysis of microarray data A Sturn, J Quackenbush, Z Trajanoski Bioinformatics 18 (1), 207-208, 2002	2006	2002
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets G Pertea, X Huang, F Liang, V Antonescu, R Sultana, S Karamycheva, ... Bioinformatics 19 (5), 651-652, 2003	1845	2003
[9] TM4 microarray software suite AI Saeed, NK Bhagabati, JC Braisted, W Liang, V Sharov, EA Howe, J Li, ... Methods in enzymology 411, 134-193, 2006	1814	2006
The molecular portraits of breast tumors are conserved across microarray platforms Z Hu, C Fan, DS Oh, JS Marron, X He, BF Qaqish, C Livasy, LA Carey, ... BMC genomics 7 (1), 1-12, 2006	1776	2006
Corrections: The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus HP Klenk, RA Clayton, JF Tomb, O White, KE Nelson, KA Ketchum, ... Nature 394 (6688), 101, 1998	1696*	1998
Artificial intelligence in radiology A Hosny, C Parmar, J Quackenbush, LH Schwartz, HJWL Aerts Nature Reviews Cancer 18 (8), 500-510, 2018	1685	2018
Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors JI Herschkowitz, K Simin, VJ Weigman, I Mikaelian, J Usary, Z Hu, ... Genome biology 8, 1-17, 2007	1543	2007
A concise guide to cDNA microarray analysis P Hegde, R Qi, K Abernathy, C Gay, S Dharap, R Gaspard, JE Hughes, ... Biotechniques 29 (3), 548-562, 2000	1353	2000
A gene map of the human genome GD Schuler, MS Boguski, EA Stewart, LD Stein, G Gyapay, K Rice, ... Science 274 (5287), 540-546, 1996	1350	1996
Multiple-laboratory comparison of microarray platforms RA Irizarry, D Warren, F Spencer, IF Kim, S Biswal, BC Frank, ... Nature methods 2 (5), 345-350, 2005	1040	2005

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