Michael Alonge
Michael Alonge
Ph.D. Student, Johns Hopkins University
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The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature Biotechnology, 1-8, 2019
RaGOO: fast and accurate reference-guided scaffolding of draft genomes
M Alonge, S Soyk, S Ramakrishnan, X Wang, S Goodwin, FJ Sedlazeck, ...
Genome biology 20 (1), 1-17, 2019
Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato
M Alonge, X Wang, M Benoit, S Soyk, L Pereira, L Zhang, H Suresh, ...
Cell, 2020
The genetic and epigenetic landscape of the Arabidopsis centromeres
M Naish, M Alonge, P Wlodzimierz, AJ Tock, BW Abramson, A Schmücker, ...
Science 374 (6569), eabi7489, 2021
Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing
M Alonge, L Lebeigle, M Kirsche, K Jenike, S Ou, S Aganezov, X Wang, ...
Genome Biology 23 (1), 1-19, 2022
The bracteatus pineapple genome and domestication of clonally propagated crops
LY Chen, R VanBuren, M Paris, H Zhou, X Zhang, CM Wai, H Yan, ...
Nature Genetics, 1-10, 2019
Duplication of a domestication locus neutralized a cryptic variant that caused a breeding barrier in tomato
S Soyk, ZH Lemmon, FJ Sedlazeck, JM Jiménez-Gómez, M Alonge, ...
Nature Plants, 1, 2019
The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry)
M Buti, M Moretto, E Barghini, F Mascagni, L Natali, M Brilli, A Lomsadze, ...
GigaScience 7 (4), 1-14, 2017
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
AM Mc Cartney, K Shafin, M Alonge, AV Bzikadze, G Formenti, ...
Nature Methods, 1-9, 2022
Chromosome-Scale Assembly of the Bread Wheat Genome Reveals Thousands of Additional Gene Copies
M Alonge, A Shumate, D Puiu, A Zimin, SL Salzberg
Genetics, 2020
Natural genetic diversity in tomato flavor genes
L Pereira, M Sapkota, M Alonge, Y Zheng, Y Zhang, H Razifard, ...
Frontiers in Plant Science 12, 914, 2021
Establishing Physalis as a new Solanaceae model system enables genetic reevaluation of the inflated calyx syndrome
J He, M Alonge, S Ramakrishnan, M Benoit, S Soyk, NT Reem, ...
bioRxiv, 2022
Pan-genomics and the structural diversity of plant genomes
MC Alonge
Johns Hopkins University, 2021
A master regulator of regeneration
M Alonge, MC Schatz
Science 363 (6432), 1152-1153, 2019
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