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Sarah Harris
Sarah Harris
Lecturer in Biological Physics, University of Leeds
Adresse e-mail validée de leeds.ac.uk
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Parmbsc1: a refined force field for DNA simulations
I Ivani, PD Dans, A Noy, A Pérez, I Faustino, A Hospital, J Walther, ...
Nature methods 13 (1), 55-58, 2016
5792016
Cooperativity in drug− DNA recognition: a molecular dynamics study
SA Harris, E Gavathiotis, MS Searle, M Orozco, CA Laughton
Journal of the American Chemical Society 123 (50), 12658-12663, 2001
1802001
Structural diversity of supercoiled DNA
RN Irobalieva, JM Fogg, DJ Catanese, T Sutthibutpong, M Chen, ...
Nature communications 6 (1), 1-11, 2015
1542015
Molecular dynamics studies of DNA A-tract structure and flexibility
EC Sherer, SA Harris, R Soliva, M Orozco, CA Laughton
Journal of the American Chemical Society 121 (25), 5981-5991, 1999
1171999
Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA
SA Harris, ZA Sands, CA Laughton
Biophysical journal 88 (3), 1684-1691, 2005
1102005
Biomolecular simulations: From dynamics and mechanisms to computational assays of biological activity
DJ Huggins, PC Biggin, MA Dämgen, JW Essex, SA Harris, ...
Wiley Interdisciplinary Reviews: Computational Molecular Science 9 (3), e1393, 2019
1052019
Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA
JS Mitchell, CA Laughton, SA Harris
Nucleic acids research 39 (9), 3928-3938, 2011
1052011
Considerations in experimental and theoretical collision cross-section measurements of small molecules using travelling wave ion mobility spectrometry-mass spectrometry
TW Knapman, JT Berryman, I Campuzano, SA Harris, AE Ashcroft
International journal of mass spectrometry 298 (1-3), 17-23, 2010
992010
Skp is a multivalent chaperone of outer-membrane proteins
B Schiffrin, AN Calabrese, PWA Devine, SA Harris, AE Ashcroft, ...
Nature structural & molecular biology 23 (9), 786-793, 2016
822016
Mapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulations
SA Harris, CA Laughton, TB Liverpool
Nucleic acids research 36 (1), 21-29, 2008
792008
Induced fit DNA recognition by a minor groove binding analogue of Hoechst 33258: fluctuations in DNA A tract structure investigated by NMR and molecular dynamics simulations
CE Bostock-Smith, SA Harris, CA Laughton, MS Searle
Nucleic acids research 29 (3), 693-702, 2001
712001
Bullied no more: when and how DNA shoves proteins around
JM Fogg, GL Randall, BM Pettitt, LS De Witt, SA Harris, L Zechiedrich
Quarterly reviews of biophysics 45 (3), 257-299, 2012
672012
Parmbsc1: a refined force field for DNA simulations
J Walther, P Andrio, R Goñi, A Balaceanu, G Portella, F Battistini, JL Gelpí, ...
Nat. Methods 13 (1), 55, 2016
662016
Large-scale molecular dynamics simulation of DNA: implementation and validation of the AMBER98 force field in LAMMPS
C Grindon, S Harris, T Evans, K Novik, P Coveney, C Laughton
Philosophical Transactions of the Royal Society of London. Series A …, 2004
642004
Peptide synthesis and self-assembly
S Maude, LR Tai, RPW Davies, B Liu, SA Harris, PJ Kocienski, A Aggeli
Peptide-Based Materials, 27-69, 2011
562011
Systematic examination of polymorphism in amyloid fibrils by molecular-dynamics simulation
JT Berryman, SE Radford, SA Harris
Biophysical journal 100 (9), 2234-2242, 2011
552011
Thermodynamic description of polymorphism in Q-and N-rich peptide aggregates revealed by atomistic simulation
JT Berryman, SE Radford, SA Harris
Biophysical journal 97 (1), 1-11, 2009
542009
Supramolecular Domains in Mixed Peptide Self‐Assembled Monolayers on Gold Nanoparticles
L Duchesne, G Wells, DG Fernig, SA Harris, R Lévy
ChemBioChem 9 (13), 2127-2134, 2008
522008
Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation
T Sutthibutpong, C Matek, C Benham, GG Slade, A Noy, C Laughton, ...
Nucleic acids research 44 (19), 9121-9130, 2016
492016
The atomistic simulation of DNA
CA Laughton, SA Harris
Wiley Interdisciplinary Reviews: Computational Molecular Science 1 (4), 590-600, 2011
462011
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