Most mammalian mRNAs are conserved targets of microRNAs RC Friedman, KKH Farh, CB Burge, DP Bartel Genome research 19 (1), 92-105, 2009 | 10075 | 2009 |
Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs CH Jan, RC Friedman, JG Ruby, DP Bartel Nature 469 (7328), 97-101, 2011 | 529 | 2011 |
Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument R Nutiu, RC Friedman, S Luo, I Khrebtukova, D Silva, R Li, L Zhang, ... Nature biotechnology 29 (7), 659-664, 2011 | 223 | 2011 |
Hepatitis C virus infection and hepatic stellate cell activation downregulate miR-29: miR-29 overexpression reduces hepatitis C viral abundance in culture S Bandyopadhyay, RC Friedman, RT Marquez, K Keck, B Kong, MS Icardi, ... Journal of Infectious Diseases 203 (12), 1753-1762, 2011 | 179 | 2011 |
Growth and host interaction of mouse segmented filamentous bacteria in vitro P Schnupf, V Gaboriau-Routhiau, M Gros, R Friedman, M Moya-Nilges, ... Nature 520 (7545), 99-103, 2015 | 162 | 2015 |
Histone deacetylase inhibition enhances antimicrobial peptide but not inflammatory cytokine expression upon bacterial challenge N Fischer, E Sechet, R Friedman, A Amiot, I Sobhani, G Nigro, ... Proceedings of the National Academy of Sciences 113 (21), E2993-E3001, 2016 | 69 | 2016 |
Common and phylogenetically widespread coding for peptides by bacterial small RNAs RC Friedman, S Kalkhof, O Doppelt-Azeroual, SA Mueller, M Chovancova, ... BMC genomics 18, 1-21, 2017 | 38 | 2017 |
Widespread haploid-biased gene expression enables sperm-level natural selection K Bhutani, K Stansifer, S Ticau, L Bojic, AC Villani, J Slisz, CM Cremers, ... Science 371 (6533), eabb1723, 2021 | 31 | 2021 |
Quantitative assessment of RNA-protein interactions with high-throughput sequencing–RNA affinity profiling A Ozer, JM Tome, RC Friedman, D Gheba, GP Schroth, JT Lis Nature protocols 10 (8), 1212-1233, 2015 | 28 | 2015 |
MicroRNA target finding by comparative genomics RC Friedman, CB Burge RNA sequence, structure, and function: computational and bioinformatic …, 2014 | 26 | 2014 |
Battle of the sex chromosomes: competition between X and Y chromosome-encoded proteins for partner interaction and chromatin occupancy drives multicopy gene expression and … C Moretti, M Blanco, C Ialy-Radio, ME Serrentino, C Gobé, R Friedman, ... Molecular biology and evolution 37 (12), 3453-3468, 2020 | 24 | 2020 |
Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome L Pinaud, ML Ferrari, R Friedman, N Jehmlich, M von Bergen, A Phalipon, ... PLoS One 12 (10), e0186920, 2017 | 11 | 2017 |
Widespread haploid-biased gene expression in mammalian spermatogenesis associated with frequent selective sweeps and evolutionary conflict K Bhutani, K Stansifer, S Ticau, L Bojic, C Villani, J Slisz, C Cremers, ... Biorxiv, 846253, 2019 | 5 | 2019 |
Discrete profile alignment via constrained information bottleneck S O'rourke, G Chechik, R Friedman, E Eskin Advances in Neural Information Processing Systems 17, 2004 | 3 | 2004 |
Genetically-biased fertilization in APOBEC1 complementation factor (A1cf) mutant mice N Hirose, G Blanchet, Y Yamauchi, AC Snow, R Friedman, CY Khoo, ... Scientific reports 12 (1), 13599, 2022 | | 2022 |
The specificity and evolution of gene regulatory elements RC Friedman Massachusetts Institute of Technology, 2010 | | 2010 |