David Phillip Nickerson
David Phillip Nickerson
Auckland Bioengineering Institute, University of Auckland
Verified email at auckland.ac.nz - Homepage
TitleCited byYear
An overview of CellML 1.1, a biological model description language
AA Cuellar, CM Lloyd, PF Nielsen, DP Bullivant, DP Nickerson, PJ Hunter
Simulation 79 (12), 740-747, 2003
3092003
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language
D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ...
BMC systems biology 5 (1), 198, 2011
1842011
CellML and associated tools and techniques
A Garny, DP Nickerson, J Cooper, RW Santos, AK Miller, S McKeever, ...
Philosophical transactions of the Royal Society A: Mathematical, physical …, 2008
1462008
Minimum information about a simulation experiment (MIASE)
D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ...
PLoS computational biology 7 (4), e1001122, 2011
1152011
Multiscale computational modelling of the heart
NP Smith, DP Nickerson, EJ Crampin, PJ Hunter
Acta Numerica 13, 371-431, 2004
1132004
The physiome model repository 2
T Yu, CM Lloyd, DP Nickerson, MT Cooling, AK Miller, A Garny, ...
Bioinformatics 27 (5), 743-744, 2011
1122011
New developments in a strongly coupled cardiac electromechanical model
D Nickerson, N Smith, P Hunter
EP Europace 7 (s2), S118-S127, 2005
1052005
OpenCMISS: a multi-physics & multi-scale computational infrastructure for the VPH/Physiome project
C Bradley, A Bowery, R Britten, V Budelmann, O Camara, R Christie, ...
Progress in biophysics and molecular biology 107 (1), 32-47, 2011
1022011
CellML metadata standards, associated tools and repositories
DA Beard, R Britten, MT Cooling, A Garny, MDB Halstead, PJ Hunter, ...
Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2009
842009
A model of cardiac cellular electromechanics
DP Nickerson, NP Smith, PJ Hunter
Philosophical Transactions of the Royal Society of London. Series A …, 2001
752001
Mathematical modelling of the heart: cell to organ
NP Smith, PJ Mulquiney, MP Nash, CP Bradley, DP Nickerson, PJ Hunter
Chaos, Solitons & Fractals 13 (8), 1613-1621, 2002
732002
An overview of the CellML API and its implementation
AK Miller, J Marsh, A Reeve, A Garny, R Britten, M Halstead, J Cooper, ...
BMC bioinformatics 11 (1), 178, 2010
712010
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
BMC bioinformatics 15 (1), 369, 2014
592014
Modelling the passive and nerve activated response of the rectus femoris muscle to a flexion loading: a finite element framework
JW Fernandez, ML Buist, DP Nickerson, PJ Hunter
Medical engineering & physics 27 (10), 862-870, 2005
492005
Computational multiscale modeling in the IUPS physiome project: modeling cardiac electromechanics
D Nickerson, M Nash, P Nielsen, N Smith, P Hunter
IBM Journal of Research and Development 50 (6), 617-630, 2006
482006
Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative
M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ...
Frontiers in bioengineering and biotechnology 3, 19, 2015
372015
The Noble cardiac ventricular electrophysiology models in CellML
DP Nickerson, PJ Hunter
Progress in biophysics and molecular biology 90 (1-3), 346-359, 2006
352006
The CellML 1.1 specification
A Cuellar, W Hedley, M Nelson, C Lloyd, M Halstead, D Bullivant, ...
Journal of integrative bioinformatics 12 (2), 4-85, 2015
272015
Practical application of CellML 1.1: The integration of new mechanisms into a human ventricular myocyte model
D Nickerson, M Buist
Progress in biophysics and molecular biology 98 (1), 38-51, 2008
242008
Using CellML with OpenCMISS to simulate multi-scale physiology
DP Nickerson, D Ladd, JR Hussan, S Safaei, V Suresh, PJ Hunter, ...
Frontiers in bioengineering and biotechnology 2, 79, 2015
212015
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Articles 1–20