Robert Hoehndorf

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Georgios GkoutosUniversity of Birmingham, College of Medical and Dental SciencesAdresse e-mail validée de bham.ac.uk
Maxat KulmanovKing Abdullah University of Science and TechnologyAdresse e-mail validée de kaust.edu.sa
Michel DumontierDistinguished Professor of Data Science, Maastricht UniversityAdresse e-mail validée de maastrichtuniversity.nl
Janet KelsoMPI EVAAdresse e-mail validée de eva.mpg.de
Dietrich Rebholz-SchuhmannZB MED -- Information Center for Life SciencesAdresse e-mail validée de zbmed.de
Xin GaoProfessor, Computer Sciences; Director, Computational Bioscience Research CenterAdresse e-mail validée de kaust.edu.sa
Anika Cawthorn (formerly Oellrich)University College LondonAdresse e-mail validée de ucl.ac.uk
Frank LoebeUniversity of LeipzigAdresse e-mail validée de informatik.uni-leipzig.de
Karin SlaterUniversity of BirminghamAdresse e-mail validée de bham.ac.uk
Fatima Zohra SmailiMcGill UniversityAdresse e-mail validée de mail.mcgill.ca
Núria Queralt-RosinachLeiden University Medical CenterAdresse e-mail validée de lumc.nl
Mona AlshahraniNational Center for Artificial Intelligence (NCAI), SDAIA, Saudi ArabiaAdresse e-mail validée de kaust.edu.sa
Azza AlthagafiPh.D. in Computer Science - Bioinformatics, KAUST, Assistant Professor at Taif University (TU)Adresse e-mail validée de kaust.edu.sa
Patryk BurekPolish-Japanese Academy of Information Technology, Warsaw, PolandAdresse e-mail validée de informatik.uni-leipzig.de
Imane BoudelliouaAdresse e-mail validée de kaust.edu.sa
Xiangliang ZhangLeonard C. Bettex Collegiate Professor, Computer Science and Engineering, University of Notre DameAdresse e-mail validée de nd.edu
Andreas KarwathAssociate Professor, Deputy Programme Director Health Data Science, University of Birmingham, UKAdresse e-mail validée de bham.ac.uk
Sarah M. AlghamdiPhd alumni, King Abdullah UniversityAdresse e-mail validée de kaust.edu.sa
Johann VisagieBioinformatics Programmer, Max Planck Institute for Evolutionary AnthropologyAdresse e-mail validée de eva.mpg.de
Shichao PeiAssistant Professor, University of Massachusetts BostonAdresse e-mail validée de umb.edu

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Robert Hoehndorf

King Abdullah University of Science and Technology

Adresse e-mail validée de kaust.edu.sa - Page d'accueil

Bioinformatics Neurosymbolic AI Knowledge representation Applied Ontology


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
DeepGO: Predicting protein functions from sequence and interactions using a deep ontology-aware classifier M Kulmanov, MA Khan, R Hoehndorf Bioinformatics 34 (4), 660-668, 2017	458	2017
DeepGOPlus: Improved protein function prediction from sequence M Kulmanov, R Hoehndorf Bioinformatics 36 (2), 422–429, 2020	395	2020
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019	388	2019
The role of ontologies in biological and biomedical research: a functional perspective R Hoehndorf, PN Schofield, GV Gkoutos Briefings in bioinformatics 16 (6), 1069-1080, 2015	328	2015
FoodOn: a harmonized food ontology to increase global food traceability, quality control and data integration DM Dooley, EJ Griffiths, GS Gosal, PL Buttigieg, R Hoehndorf, MC Lange, ... npj Science of Food 2 (1), 23, 2018	286	2018
Text-mining solutions for biomedical research: enabling integrative biology D Rebholz-Schuhmann, A Oellrich, R Hoehndorf Nature Reviews Genetics 13 (12), 829-839, 2012	276	2012
The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery M Dumontier, CJO Baker, J Baran, A Callahan, L Chepelev, ... Journal of biomedical semantics 5, 1-11, 2014	260	2014
PhenomeNET: a whole-phenome approach to disease gene discovery R Hoehndorf, PN Schofield, GV Gkoutos Nucleic acids research 39 (18), e119-e119, 2011	248	2011
Semantic similarity and machine learning with ontologies. M Kulmanov, FZ Smaili, X Gao, R Hoehndorf Briefings in Bioinformatics, 2020	201*	2020
Neuro-symbolic representation learning on biological knowledge graphs M Alshahrani, MA Khan, O Maddouri, AR Kinjo, N Queralt-Rosinach, ... Bioinformatics 33 (17), 2723-2730, 2017	172	2017
Opa2vec: combining formal and informal content of biomedical ontologies to improve similarity-based prediction FZ Smaili, X Gao, R Hoehndorf Bioinformatics 35 (12), 2133-2140, 2018	161	2018
Semi-supervised entity alignment via knowledge graph embedding with awareness of degree difference S Pei, L Yu, R Hoehndorf, X Zhang The world wide web conference, 3130-3136, 2019	156	2019
Analysis of mammalian gene function through broad-based phenotypic screens across a consortium of mouse clinics M Hrabě de Angelis, G Nicholson, M Selloum, JK White, H Morgan, ... Nature genetics 47 (9), 969-978, 2015	148	2015
Onto2Vec: joint vector-based representation of biological entities and their ontology-based annotations FZ Smaili, X Gao, R Hoehndorf Bioinformatics 34 (13), i52–i60, 2018	139	2018
The Units Ontology: a tool for integrating units of measurement in science GV Gkoutos, PN Schofield, R Hoehndorf Database 2012, bas033, 2012	133	2012
General Formal Ontology (GFO): A foundational ontology integrating objects and processes H Herre, B Heller, P Burek, R Hoehndorf, F Loebe, H Michalek Onto-Med Report 8, 53, 2006	131	2006
EL Embeddings: Geometric construction of models for the Description Logic EL++ M Kulmanov, W Liu-Wei, Y Yan, R Hoehndorf Proceedings of the Twenty-Eighth International Joint Conference on …, 2019	125	2019
Evaluation of research in biomedical ontologies R Hoehndorf, M Dumontier, GV Gkoutos Briefings in bioinformatics 14 (6), 696-712, 2013	117	2013
Analysis of the human diseasome using phenotype similarity between common, genetic and infectious diseases R Hoehndorf, PN Schofield, GV Gkoutos Scientific reports 5 (1), 1-14, 2015	114	2015
Aber-OWL: a framework for ontology-based data access in biology R Hoehndorf, L Slater, PN Schofield, GV Gkoutos BMC bioinformatics 16, 1-9, 2015	112	2015

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