Alvis Brazma
Title
Cited by
Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10138*2012
Minimum information about a microarray experiment (MIAME)—toward standards for microarray data
A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ...
Nature genetics 29 (4), 365, 2001
44032001
Knowledge-based analysis of microarray gene expression data by using support vector machines
MPS Brown, WN Grundy, D Lin, N Cristianini, CW Sugnet, TS Furey, ...
Proceedings of the National Academy of Sciences 97 (1), 262-267, 2000
29482000
International network of cancer genome projects
International Cancer Genome Consortium
Nature 464 (7291), 993, 2010
15622010
Transcriptome and genome sequencing uncovers functional variation in humans
T Lappalainen, M Sammeth, MR Friedlšnder, P AC‘t Hoen, J Monlong, ...
Nature 501 (7468), 506-511, 2013
13382013
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
S Durinck, Y Moreau, A Kasprzyk, S Davis, B De Moor, A Brazma, ...
Bioinformatics 21 (16), 3439-3440, 2005
10412005
The PRIDE database and related tools and resources in 2019: improving support for quantification data
Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ...
Nucleic acids research 47 (D1), D442-D450, 2019
9732019
ArrayExpress—a public repository for microarray gene expression data at the EBI
A Brazma, H Parkinson, U Sarkans, M Shojatalab, J Vilo, ...
Nucleic acids research 31 (1), 68-71, 2003
9712003
Gene expression data analysis
A Brazma, J Vilo
FEBS letters 480 (1), 17-24, 2000
7882000
Global transcriptional responses of fission yeast to environmental stress
D Chen, WM Toone, J Mata, R Lyne, G Burns, K Kivinen, A Brazma, ...
Molecular biology of the cell 14 (1), 214-229, 2003
7692003
The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data
H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, ...
Nature biotechnology 22 (2), 177-183, 2004
6862004
ArrayExpress—a public database of microarray experiments and gene expression profiles
H Parkinson, M Kapushesky, M Shojatalab, N Abeygunawardena, ...
Nucleic acids research 35 (suppl_1), D747-D750, 2007
6152007
ArrayExpress update—simplifying data submissions
N Kolesnikov, E Hastings, M Keays, O Melnichuk, YA Tang, E Williams, ...
Nucleic acids research 43 (D1), D1113-D1116, 2015
6052015
Design and implementation of microarray gene expression markup language (MAGE-ML)
PT Spellman, M Miller, J Stewart, C Troup, U Sarkans, S Chervitz, ...
Genome biology 3 (9), research0046. 1, 2002
5462002
Periodic gene expression program of the fission yeast cell cycle
G Rustici, J Mata, K Kivinen, P Liů, CJ Penkett, G Burns, J Hayles, ...
Nature genetics 36 (8), 809-817, 2004
5442004
Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project
CF Taylor, D Field, SA Sansone, J Aerts, R Apweiler, M Ashburner, ...
Nature biotechnology 26 (8), 889-896, 2008
5042008
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression
H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ...
Nucleic acids research 37 (suppl_1), D868-D872, 2009
4752009
Predicting gene regulatory elements in silico on a genomic scale
A Brāzma, I Jonassen, J Vilo, E Ukkonen
Genome research 8 (11), 1202-1215, 1998
4441998
Approaches to the automatic discovery of patterns in biosequences
A Brazma, I Jonassen, I Eidhammer, D Gilbert
Journal of computational biology 5 (2), 279-305, 1998
4381998
ArrayExpress—a public repository for microarray gene expression data at the EBI
H Parkinson, U Sarkans, M Shojatalab, N Abeygunawardena, S Contrino, ...
Nucleic acids research 33 (suppl_1), D553-D555, 2005
4042005
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