| QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010 | 35711 | 2010 |
| An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ... The ISME journal 6 (3), 610-618, 2012 | 5341 | 2012 |
| Human genetics shape the gut microbiome JK Goodrich, JL Waters, AC Poole, JL Sutter, O Koren, R Blekhman, ... Cell 159 (4), 789-799, 2014 | 3216 | 2014 |
| Host remodeling of the gut microbiome and metabolic changes during pregnancy O Koren, JK Goodrich, TC Cullender, A Spor, K Laitinen, HK Bäckhed, ... Cell 150 (3), 470-480, 2012 | 2237 | 2012 |
| Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome B Chassaing, O Koren, JK Goodrich, AC Poole, S Srinivasan, RE Ley, ... Nature 519 (7541), 92-96, 2015 | 2073 | 2015 |
| Genetic determinants of the gut microbiome in UK twins JK Goodrich, ER Davenport, M Beaumont, MA Jackson, R Knight, C Ober, ... Cell host & microbe 19 (5), 731-743, 2016 | 1030 | 2016 |
| Conducting a microbiome study JK Goodrich, SC Di Rienzi, AC Poole, O Koren, WA Walters, JG Caporaso, ... Cell 158 (2), 250-262, 2014 | 848 | 2014 |
| Proton pump inhibitors alter the composition of the gut microbiota MA Jackson, JK Goodrich, ME Maxan, DE Freedberg, JA Abrams, ... Gut 65 (5), 749-756, 2016 | 841 | 2016 |
| Host genetic variation impacts microbiome composition across human body sites R Blekhman, JK Goodrich, K Huang, Q Sun, R Bukowski, JT Bell, ... Genome biology 16, 1-12, 2015 | 775 | 2015 |
| Selection on soil microbiomes reveals reproducible impacts on plant function K Panke-Buisse, AC Poole, JK Goodrich, RE Ley, J Kao-Kniffin The ISME journal 9 (4), 980-989, 2015 | 638 | 2015 |
| Transient inability to manage proteobacteria promotes chronic gut inflammation in TLR5-deficient mice FA Carvalho, O Koren, JK Goodrich, MEV Johansson, I Nalbantoglu, ... Cell host & microbe 12 (2), 139-152, 2012 | 529 | 2012 |
| The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria SC Di Rienzi, I Sharon, KC Wrighton, O Koren, LA Hug, BC Thomas, ... elife 2, e01102, 2013 | 406 | 2013 |
| Reduced diversity and altered composition of the gut microbiome in individuals with myalgic encephalomyelitis/chronic fatigue syndrome L Giloteaux, JK Goodrich, WA Walters, SM Levine, RE Ley, MR Hanson Microbiome 4, 1-12, 2016 | 356 | 2016 |
| Variant interpretation using population databases: Lessons from gnomAD S Gudmundsson, M Singer‐Berk, NA Watts, W Phu, JK Goodrich, ... Human mutation 43 (8), 1012-1030, 2022 | 318 | 2022 |
| The relationship between the human genome and microbiome comes into view JK Goodrich, ER Davenport, AG Clark, RE Ley Annual review of genetics 51 (1), 413-433, 2017 | 312 | 2017 |
| Cross-species comparisons of host genetic associations with the microbiome JK Goodrich, ER Davenport, JL Waters, AG Clark, RE Ley Science 352 (6285), 532-535, 2016 | 294 | 2016 |
| Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins EE Hansen, CA Lozupone, FE Rey, M Wu, JL Guruge, A Narra, ... Proceedings of the National Academy of Sciences 108 (supplement_1), 4599-4606, 2011 | 266 | 2011 |
| Heritable components of the human fecal microbiome are associated with visceral fat M Beaumont, JK Goodrich, MA Jackson, I Yet, ER Davenport, ... Genome biology 17, 1-19, 2016 | 251 | 2016 |
| A genomic mutational constraint map using variation in 76,156 human genomes S Chen, LC Francioli, JK Goodrich, RL Collins, M Kanai, Q Wang, J Alföldi, ... Nature 625 (7993), 92-100, 2024 | 239 | 2024 |
| Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat J Kirk Harris, J Gregory Caporaso, JJ Walker, JR Spear, NJ Gold, ... The ISME journal 7 (1), 50-60, 2013 | 233 | 2013 |
