Benilton S Carvalho
Benilton S Carvalho
Adresse e-mail validée de unicamp.br
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Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
17682015
A framework for oligonucleotide microarray preprocessing
BS Carvalho, RA Irizarry
Bioinformatics 26 (19), 2363-2367, 2010
9142010
Comprehensive molecular characterization of muscle-invasive bladder cancer
AG Robertson, J Kim, H Al-Ahmadie, J Bellmunt, G Guo, AD Cherniack, ...
Cell 171 (3), 540-556. e25, 2017
7672017
Comprehensive high-throughput arrays for relative methylation (CHARM)
RA Irizarry, C Ladd-Acosta, B Carvalho, H Wu, SA Brandenburg, ...
Genome research 18 (5), 780-790, 2008
4452008
Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data
B Carvalho, H Bengtsson, TP Speed, RA Irizarry
Biostatistics 8 (2), 485-499, 2007
2952007
Ordering of mutations in preinvasive disease stages of esophageal carcinogenesis
JMJ Weaver, CS Ross-Innes, N Shannon, AG Lynch, T Forshew, ...
Nature genetics 46 (8), 837-843, 2014
2552014
Estimation and assessment of raw copy numbers at the single locus level
H Bengtsson, R Irizarry, B Carvalho, TP Speed
Bioinformatics 24 (6), 759-767, 2008
1802008
Arterial stiffness is associated with regional ventricular systolic and diastolic dysfunction: the Multi-Ethnic Study of Atherosclerosis
VRS Fernandes, JF Polak, S Cheng, BD Rosen, B Carvalho, K Nasir, ...
Arteriosclerosis, thrombosis, and vascular biology 28 (1), 194-201, 2008
1292008
Using the R package crlmm for genotyping and copy number estimation
RB Scharpf, RA Irizarry, ME Ritchie, B Carvalho, I Ruczinski
Journal of statistical software 40 (12), 1, 2011
1182011
Subclinical atherosclerosis and incipient regional myocardial dysfunction in asymptomatic individuals: the Multi-Ethnic Study of Atherosclerosis (MESA)
VRS Fernandes, JF Polak, T Edvardsen, B Carvalho, A Gomes, ...
Journal of the American College of Cardiology 47 (12), 2420-2428, 2006
1172006
Resting heart rate as predictor for left ventricular dysfunction and heart failure: MESA (Multi-Ethnic Study of Atherosclerosis)
A Opdahl, BA Venkatesh, VRS Fernandes, CO Wu, K Nasir, EY Choi, ...
Journal of the American College of Cardiology 63 (12), 1182-1189, 2014
902014
Genome‐wide copy number alterations detection in fresh frozen and matched FFPE samples using SNP 6.0 arrays
M Tuefferd, A De Bondt, I Van Den Wyngaert, W Talloen, T Verbeke, ...
Genes, Chromosomes and Cancer 47 (11), 957-964, 2008
652008
Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences
S Yegnasubramanian, Z Wu, MC Haffner, D Esopi, MJ Aryee, R Badrinath, ...
BMC genomics 12 (1), 1-19, 2011
632011
Quantifying uncertainty in genotype calls
BS Carvalho, TA Louis, RA Irizarry
Bioinformatics 26 (2), 242-249, 2010
632010
Educational and socioeconomic background of undergraduates and academic performance: consequences for affirmative action programs at a Brazilian research university
RHL Pedrosa, JNW Dachs, RP Maia, CY Andrade, BS Carvalho
Imhe, 2006
522006
Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
ME Ritchie, R Liu, BS Carvalho, RA Irizarry, ...
BMC bioinformatics 12 (1), 68, 2011
482011
Enhanced infarct border zone function and altered mechanical activation predict inducibility of monomorphic ventricular tachycardia in patients with ischemic cardiomyopathy
VRS Fernandes, KC Wu, BD Rosen, A Schmidt, AC Lardo, N Osman, ...
Radiology 245 (3), 712-719, 2007
482007
R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips
ME Ritchie, BS Carvalho, KN Hetrick, S Tavaré, RA Irizarry
Bioinformatics 25 (19), 2621-2623, 2009
472009
Statistical genomics: methods and protocols
F Hahne, R Ivanek
Chapter visualizing genomic data using Gviz and Bioconductor. New York …, 2016
45*2016
A multilevel model to address batch effects in copy number estimation using SNP arrays
RB Scharpf, I Ruczinski, B Carvalho, B Doan, A Chakravarti, RA Irizarry
Biostatistics 12 (1), 33-50, 2011
442011
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