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Ritesh Krishna
Ritesh Krishna
IBM Research UK
Adresse e-mail validée de uk.ibm.com - Page d'accueil
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ProteoAnnotator–open source proteogenomics annotation software supporting PSI standards
F Ghali, R Krishna, S Perkins, A Collins, D Xia, J Wastling, AR Jones
Proteomics 14 (23-24), 2731-2741, 2014
412014
How to manipulate landscapes to improve the potential for range expansion
JA Hodgson, DW Wallis, R Krishna, SJ Cornell
Methods in Ecology and Evolution 7 (12), 1558-1566, 2016
382016
jmz I dent ML API: AJ ava interface to the mz I dent ML standard for peptide and protein identification data
F Reisinger, R Krishna, F Ghali, D Ríos, H Hermjakob, J Antonio Vizcaíno, ...
Proteomics 12 (6), 790-794, 2012
382012
Tools (Viewer, Library and Validator) that facilitate use of the peptide and protein identification standard format, termed mzIdentML
F Ghali, R Krishna, P Lukasse, S Martínez-Bartolomé, F Reisinger, ...
Molecular & Cellular Proteomics 12 (11), 3026-3035, 2013
372013
Stage-specific proteomes from Onchocerca ochengi, sister species of the human river blindness parasite, uncover adaptations to a nodular lifestyle
SD Armstrong, D Xia, GS Bah, R Krishna, HF Ngangyung, EJ LaCourse, ...
Molecular & Cellular Proteomics 15 (8), 2554-2575, 2016
292016
A large‐scale proteogenomics study of apicomplexan pathogens—Toxoplasma gondii and Neospora caninum
R Krishna, D Xia, S Sanderson, A Shanmugasundram, S Vermont, ...
Proteomics 15 (15), 2618-2628, 2015
292015
FDRAnalysis: a tool for the integrated analysis of tandem mass spectrometry identification results from multiple search engines
DC Wedge, R Krishna, P Blackhurst, JA Siepen, AR Jones, SJ Hubbard
Journal of proteome research 10 (4), 2088-2094, 2011
272011
Parasites, proteomes and systems: has Descartes’ clock run out of time?
JM Wastling, SD Armstrong, R Krishna, D Xia
Parasitology 139 (9), 1103-1118, 2012
242012
Using human in vitro transcriptome analysis to build trustworthy machine learning models for prediction of animal drug toxicity
LJ Gardiner, AP Carrieri, J Wilshaw, S Checkley, EO Pyzer-Knapp, ...
Scientific reports 10 (1), 9522, 2020
172020
Large-scale and significant expression from pseudogenes in Sodalis glossinidius – a facultative bacterial endosymbiont
I Goodhead, F Blow, P Brownridge, M Hughes, J Kenny, R Krishna, ...
Microbial genomics 6 (1), e000285, 2020
162020
A temporal precedence based clustering method for gene expression microarray data
R Krishna, CT Li, V Buchanan-Wollaston
BMC bioinformatics 11, 1-25, 2010
162010
A partial granger causality approach to explore causal networks derived from multi-parameter data
R Krishna, S Guo
International Conference on Computational Methods in Systems Biology, 9-27, 2008
142008
The sequence of a male-specific genome region containing the sex determination switch in Aedes aegypti
J Turner, R Krishna, AE Van’t Hof, ER Sutton, K Matzen, AC Darby
Parasites & vectors 11, 1-5, 2018
132018
Accelerating molecular discovery through data and physical sciences: Applications to peptide-membrane interactions
F Cipcigan, AP Carrieri, EO Pyzer-Knapp, R Krishna, YW Hsiao, M Winn, ...
The Journal of Chemical Physics 148 (24), 2018
132018
Interpreting machine learning models to investigate circadian regulation and facilitate exploration of clock function
LJ Gardiner, R Rusholme-Pilcher, J Colmer, H Rees, JM Crescente, ...
Proceedings of the National Academy of Sciences 118 (32), e2103070118, 2021
122021
Listen to genes: dealing with microarray data in the frequency domain
J Feng, D Yi, R Krishna, S Guo, V Buchanan-Wollaston
PLoS One 4 (4), e5098, 2009
122009
The jmz Q uant ML programming interface and validator for the mz Q uant ML data standard
D Qi, R Krishna, AR Jones
Proteomics 14 (6), 685-688, 2014
92014
Hierarchically labeled database indexing allows scalable characterization of microbiomes
F Utro, N Haiminen, E Siragusa, LJ Gardiner, E Seabolt, R Krishna, ...
Iscience 23 (4), 2020
72020
Re-purposing software for functional characterization of the microbiome
LJ Gardiner, N Haiminen, F Utro, L Parida, E Seabolt, R Krishna, ...
Microbiome 9, 1-12, 2021
62021
Baas-bioinformatics as a service
R Krishna, V Elisseev, S Antao
Euro-Par 2018: Parallel Processing Workshops: Euro-Par 2018 International …, 2019
62019
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