| Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells KE Szulwach, X Li, Y Li, CX Song, JW Han, SS Kim, S Namburi, ... PLoS genetics 7 (6), e1002154, 2011 | 329 | 2011 |
| Extrachromosomal DNA is associated with oncogene amplification and poor outcome across multiple cancers H Kim, NP Nguyen, K Turner, S Wu, AD Gujar, J Luebeck, J Liu, ... Nature genetics 52 (9), 891-897, 2020 | 295 | 2020 |
| Deep learning-based cross-classifications reveal conserved spatial behaviors within tumor histological images J Noorbakhsh, S Farahmand, A Foroughi Pour, S Namburi, D Caruana, ... Nature communications 11 (1), 6367, 2020 | 133 | 2020 |
| Mutations in DNA repair genes are associated with increased neoantigen burden and a distinct immunophenotype in lung squamous cell carcinoma YK Chae, JF Anker, MS Oh, P Bais, S Namburi, S Agte, FJ Giles, ... Scientific reports 9 (1), 3235, 2019 | 75 | 2019 |
| CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence Y Zhao, Z Pan, S Namburi, A Pattison, A Posner, S Balachander, ... EBioMedicine 61, 2020 | 71 | 2020 |
| CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens P Bais, S Namburi, DM Gatti, X Zhang, JH Chuang Bioinformatics 33 (19), 3110-3112, 2017 | 65 | 2017 |
| Mutations in DNA repair genes are associated with increased neo-antigen load and activated T cell infiltration in lung adenocarcinoma YK Chae, JF Anker, P Bais, S Namburi, FJ Giles, JH Chuang Oncotarget 9 (8), 7949, 2018 | 56 | 2018 |
| ChIA-PIPE: a fully automated pipeline for comprehensive ChIA-PET data analysis and visualization B Lee, J Wang, L Cai, M Kim, S Namburi, H Tjong, Y Feng, P Wang, ... Science advances 6 (28), eaay2078, 2020 | 22 | 2020 |
| Distribution-based measures of tumor heterogeneity are sensitive to mutation calling and lack strong clinical predictive power JC Javad Noorbakhsh, Hyunsoo Kim, Sandeep Namburi Scientific Reports, volume 8, Article number: 11445 (2018), 2018 | 22 | 2018 |
| Immunologic and clinical implications of CD73 expression in non-small cell lung cancer (NSCLC). LC Park, K Rhee, WB Kim, A Cho, J Song, JF Anker, M Oh, P Bais, ... Journal of Clinical Oncology 36 (15_suppl), 12050-12050, 2018 | 22 | 2018 |
| Fostering bioinformatics education through skill development of professors: Big Genomic Data Skills Training for Professors YA Zhan, CG Wray, S Namburi, ST Glantz, R Laubenbacher, JH Chuang PLoS computational biology 15 (6), e1007026, 2019 | 17 | 2019 |
| Pan-cancer classifications of tumor histological images using deep learning JHC Javad Noorbakhsh, Saman Farahmand, Mohammad Soltanieh-ha, Sandeep ... bioRxiv, 2019 | 14* | 2019 |
| Frequent extrachromosomal oncogene amplification drives aggressive tumors H Kim, N Nguyen, K Turner, S Wu, J Liu, V Deshpande, S Namburi, ... bioRxiv, 859306, 2019 | 9 | 2019 |
| Pan-cancer machine learning predictors of primary site of origin and molecular subtype WF Flynn, S Namburi, CA Paisie, HV Reddi, S Li, RKM Karuturi, J George BioRxiv, 333914, 2018 | 8 | 2018 |
| Abstract PO-003: Deep learning identifies conserved pan-cancer tumor features J Noorbakhsh, S Farahmand, A Foroughi pour, S Namburi, D Caruana, ... Clinical Cancer Research 27 (5_Supplement), PO-003-PO-003, 2021 | 1 | 2021 |
| Deep learning functional associations using histopathology images J Noorbakhsh, S Farahmand, MS Ha, S Namburi, K Zarringhalam, ... Cancer Research 79 (13_Supplement), 1632-1632, 2019 | | 2019 |
| The Mouseion at the JAXlibrary J Noorbakhsh, S Farahmand, AF Pour, S Namburi, D Caruana | | |
