Arrate Muñoz Barrutia

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Carlos Ortiz de SolorzanoFull Professor - CIMA - Universidad de NavarraVerified email at unav.es
Michael UnserProfessor, Biomedical Imaging Group, Ecole Polytechnique Fédérale de Lausanne (EPFL), SwitzerlandVerified email at epfl.ch
Estibaliz Gómez-de-MariscalPostdoc Henriques Lab, Instituto Gulbenkian de Ciência, Oeiras, PortugalVerified email at igc.gulbenkian.pt
JUAN JOSE VAQUEROProfessor, Universidad Carlos III de MadridVerified email at ing.uc3m.es
Ignacio Arganda-CarrerasIkerbasque Associate Researcher at University of the Basque Country and DIPCVerified email at ehu.eus
Mario CeresaJoint Research Center, European CommissionVerified email at ec.europa.eu
Thomas PengoDirector of Research Informatics, U of MinnesotaVerified email at umn.edu
Daniel SageBiomedical Imaging Group, Center for Imaging, EPFL, Lausanne, SwitzerlandVerified email at epfl.ch
Javier J ZuluetaProfessor of Medicine, Chief, Pulmonary, Critical Care and Sleep Medicine, Mount Sinai MorningsideVerified email at mountsinai.org
Wei OuyangAssistant Professor, Science for Life Laboratory | KTH Royal Institute of Technology, StockholmVerified email at kth.se
DANIEL GARCIA GONZALEZUniversidad Carlos III de MadridVerified email at ing.uc3m.es
Denis WirtzT.H. Smoot Professor of Engineering Science, Pathology, and Oncology; VP Research, Johns HopkinsVerified email at jhu.edu
Jan KybicFaculty of Electrical Engineering, Czech Technical University in PragueVerified email at fel.cvut.cz
Carlos Oscar S. Sorzano (ORCID:000...National Center of Biotechnology (CSIC)Verified email at cnb.csic.es
Maria J. Ledesma-CarbayoFull Professor, Universidad Politécnica de MadridVerified email at upm.es
Pedro M. GordalizaCenter for Biomedical Imaging (CIBM), Universidad Carlos III de Madrid

Arrate Muñoz Barrutia

Professor, Univ. Carlos III de Madrid; Instituto de Investigación Sanitaria Gregorio Marañón

Verified email at ing.uc3m.es - Homepage

image processing biomedical imaging microscopy radiology


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Combination strategies in multi-atlas image segmentation: Application to brain MR data X Artaechevarria, A Muñoz-Barrutia, C Ortiz-de-Solorzano Medical Imaging, IEEE Transactions on 28 (8), 1266-1277, 2009	639	2009
3D reconstruction of histological sections: Application to mammary gland tissue I Arganda‐Carreras, R Fernández‐González, A Muñoz‐Barrutia, ... Microscopy Research and Technique 73 (11), 1019-1029, 2010	606	2010
An objective comparison of cell-tracking algorithms V Ulman, M Maška, KEG Magnusson, O Ronneberger, C Haubold, ... Nature methods 14 (12), 1141-1152, 2017	506	2017
A benchmark for comparison of cell tracking algorithms M Maška, V Ulman, D Svoboda, P Matula, P Matula, C Ederra, A Urbiola, ... Bioinformatics 30 (11), 1609-1617, 2014	454	2014
Adiposoft: automated software for the analysis of white adipose tissue cellularity in histological sections M Galarraga, J Campión, A Muñoz-Barrutia, N Boqué, H Moreno, ... Journal of Lipid Research 53 (12), 2791-2796, 2012	330	2012
Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: the VESSEL12 study RD Rudyanto, S Kerkstra, EM van Rikxoort, C Fetita, PY Brillet, C Lefevre, ... Medical image analysis 18 (7), 1217-1232, 2014	166	2014
Automated neuromelanin imaging as a diagnostic biomarker for Parkinson's disease G Castellanos, MA Fernández‐Seara, O Lorenzo‐Betancor, ... Movement Disorders 30 (7), 945-952, 2015	160	2015
Least-squares image resizing using finite differences A Muñoz-Barrutia, T Blu, M Unser IEEE Trans. Image Process 10 (9), 1365-1378, 2001	157	2001
Characterization of three-dimensional cancer cell migration in mixed collagen-Matrigel scaffolds using microfluidics and image analysis M Anguiano, C Castilla, M Maška, C Ederra, R Peláez, X Morales, ... PloS one 12 (2), e0171417, 2017	153	2017
DeepImageJ: A user-friendly environment to run deep learning models in ImageJ E Gomez-de-Mariscal, C Garcia-Lopez-de-Haro, W Ouyang, L Donati, ... Nature Methods 18, 1192-1195, 2021	135	2021
Segmentation and Shape Tracking of Whole Fluorescent Cells Based on the Chan-Vese Model M Maska, O Danek, S Garasa, A Rouzaut, A Muñoz-Barrutia, OS Carlos IEEE Transactions on Medical Imaging 32 (6), 995-1006, 2013	128	2013
Continuous wavelet transform with arbitrary scales and O (N) complexity A Muñoz, R Ertlé, M Unser Signal processing 82 (5), 749-757, 2002	107	2002
ANHIR: automatic non-rigid histological image registration challenge J Borovec, J Kybic, I Arganda-Carreras, DV Sorokin, G Bueno, ... IEEE transactions on medical imaging 39 (10), 3042-3052, 2020	88	2020
Applications of Light Sheet Microscopy in Microdevices I Albert-Smet, A Marcos-Vidal, JJ Vaquero, M Desco, A Muñoz-Barrutia, ... Frontiers in Neuroanatomy 13, 1, 2019	69	2019
New Strategies for Echocardiographic Evaluation of Left Ventricular Function in a Mouse Model of Long-Term Myocardial Infarction C Benavides-Vallve, D Corbacho, O Iglesias-Garcia, B Pelacho, E Albiasu, ... PloS one 7 (7), e41691, 2012	64	2012
Quantification of lung damage in an elastase-induced mouse model of emphysema A Muñoz-Barrutia, M Ceresa, X Artaechevarria, LM Montuenga, ... Journal of Biomedical Imaging 2012, 5, 2012	64	2012
Segmentation of touching cell nuclei using a two-stage graph cut model O Daněk, P Matula, C Ortiz-de-Solórzano, A Muñoz-Barrutia, M Maška, ... Scandinavian Conference on Image Analysis, 410-419, 2009	64	2009
Evaluation of micro-CT for emphysema assessment in mice: comparison with non-radiological techniques X Artaechevarria, D Blanco, G de Biurrun, M Ceresa, D Pérez-Martín, ... European radiology 21 (5), 954-962, 2011	50	2011
Benchmarking of Image Registration Methods for Differently Stained Histological Slides J Borovec, A Munoz-Barrutia, J Kybic 2018 25th IEEE International Conference on Image Processing (ICIP), 3368-3372, 2018	49	2018
Airway segmentation and analysis for the study of mouse models of lung disease using micro-CT X Artaechevarria, D Perez-Martin, M Ceresa, G de Biurrun, D Blanco, ... Physics in Medicine and Biology 54 (22), 7009, 2009	47	2009

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