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Alexander Dobin
Alexander Dobin
Adresse e-mail validée de cshl.edu
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STAR: ultrafast universal RNA-seq aligner
A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ...
Bioinformatics 29 (1), 15-21, 2013
246032013
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
118422012
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
46832012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
15512014
The developmental transcriptome of Drosophila melanogaster
BR Graveley, AN Brooks, JW Carlson, MO Duff, JM Landolin, L Yang, ...
Nature 471 (7339), 473-479, 2011
15232011
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
13452011
Mapping RNA‐seq reads with STAR
A Dobin, TR Gingeras
Current protocols in bioinformatics 51 (1), 11.14. 1-11.14. 19, 2015
7172015
Systematic evaluation of spliced alignment programs for RNA-seq data
PG Engström, T Steijger, B Sipos, GR Grant, A Kahles, G Rätsch, ...
Nature methods 10 (12), 1185-1191, 2013
5242013
Comparison of the transcriptional landscapes between human and mouse tissues
S Lin, Y Lin, JR Nery, MA Urich, A Breschi, CA Davis, A Dobin, C Zaleski, ...
Proceedings of the National Academy of Sciences 111 (48), 17224-17229, 2014
5012014
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
4572020
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome biology 13 (8), 1-5, 2012
3432012
Recording on Bit-Patterned Media at Densities of 1 Tb/inand Beyond
HJ Richter, AY Dobin, O Heinonen, KZ Gao, RJM vd Veerdonk, RT Lynch, ...
IEEE Transactions on Magnetics 42 (10), 2255-2260, 2006
3392006
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
2932014
Genome-wide antisense transcription drives mRNA processing in bacteria
I Lasa, A Toledo-Arana, A Dobin, M Villanueva, IR de los Mozos, ...
Proceedings of the National Academy of Sciences 108 (50), 20172-20177, 2011
2682011
The transcriptional diversity of 25 Drosophila cell lines
L Cherbas, A Willingham, D Zhang, L Yang, Y Zou, BD Eads, JW Carlson, ...
Genome research 21 (2), 301-314, 2011
2432011
Domain wall assisted magnetic recording
AY Dobin, HJ Richter
Applied Physics Letters 89 (6), 062512, 2006
2412006
Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
BJ Haas, A Dobin, B Li, N Stransky, N Pochet, A Regev
Genome biology 20 (1), 1-16, 2019
2232019
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
P Batut, A Dobin, C Plessy, P Carninci, TR Gingeras
Genome research 23 (1), 169-180, 2013
1932013
Recording potential of bit-patterned media
HJ Richter, AY Dobin, RT Lynch, D Weller, RM Brockie, O Heinonen, ...
Applied Physics Letters 88 (22), 222512, 2006
1862006
A benchmark for RNA-seq quantification pipelines
M Teng, MI Love, CA Davis, S Djebali, A Dobin, BR Graveley, S Li, ...
Genome biology 17 (1), 1-12, 2016
1822016
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