| MentaLiST–A fast MLST caller for large MLST schemes P Feijao, HT Yao, D Fornika, J Gardy, W Hsiao, C Chauve, ... Microbial genomics 4 (2), e000146, 2018 | 70 | 2018 |
| Stochastic sampling of structural contexts improves the scalability and accuracy of RNA 3d module identification R Sarrazin-Gendron, HT Yao, V Reinharz, CG Oliver, Y Ponty, ... International Conference on Research in Computational Molecular Biology, 186-201, 2020 | 17 | 2020 |
| Taming disruptive base pairs to reconcile positive and negative structural design of RNA HT Yao, J Waldispühl, Y Ponty, S Will RECOMB 2021-25th international conference on research in computational …, 2021 | 16 | 2021 |
| Exponentially few RNA structures are designable HT Yao, C Chauve, M Regnier, Y Ponty Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019 | 9 | 2019 |
| Infrared: a declarative tree decomposition-powered framework for bioinformatics HT Yao, B Marchand, SJ Berkemer, Y Ponty, S Will Algorithms for Molecular Biology 19 (1), 13, 2024 | 8 | 2024 |
| Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package HT Yao, R Lorenz, IL Hofacker, PF Stadler Algorithms for Molecular Biology 18 (1), 8, 2023 | 5 | 2023 |
| Developing complex RNA design applications in the Infrared framework HT Yao, Y Ponty, S Will RNA Folding: Methods and Protocols, 285-313, 2012 | 4 | 2012 |
| Phylogenetic information as soft constraints in RNA secondary structure prediction S von Löhneysen, T Spicher, Y Varenyk, HT Yao, R Lorenz, I Hofacker, ... International Symposium on Bioinformatics Research and Applications, 267-279, 2023 | 2 | 2023 |
| Local decomposition in RNA structural design HT Yao McGill University (Canada), 2021 | 2 | 2021 |
| Advanced design of structural RNAs using RNARedPrint Y Ponty, S Hammer, HT Yao, S Will RNA Bioinformatics, 1-15, 2021 | 2 | 2021 |
| Old dog, new tricks: Exact seeding strategy improves RNA design performances T Boury, L Sidl, IL Hofacker, Y Ponty, HT Yao | | 2024 |
| A Relation between Natural Selection and Computational Complexity L Sidl, M Faissner, M Uhlir, CA Velandia-Huerto, M Waldl, HT Yao, ... | | 2024 |
| Sequence design for RNA-RNA interactions M Waldl, HT Yao, IL Hofacker RNA Design: Methods and Protocols, 1-16, 2024 | | 2024 |
| Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction S von Löhneysen, T Spicher, Y Varenyk, HT Yao, R Lorenz, I Hofacker, ... Journal of Computational Biology 31 (6), 549-563, 2024 | | 2024 |
| Salt corrections for RNA secondary structures in the ViennaRNA package HT Yao, R Lorenz, IL Hofacker, PF Stadler bioRxiv, 2023.04. 07.536000, 2023 | | 2023 |
