Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 MI Love, W Huber, S Anders Genome biology 15 (12), 550, 2014 | 22294 | 2014 |
Differential expression analysis for sequence count data S Anders, W Huber Nature Precedings, 1-1, 2010 | 11664 | 2010 |
HTSeq—a Python framework to work with high-throughput sequencing data S Anders, PT Pyl, W Huber Bioinformatics 31 (2), 166-169, 2015 | 10134 | 2015 |
Orchestrating high-throughput genomic analysis with Bioconductor W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ... Nature methods 12 (2), 115-121, 2015 | 1922 | 2015 |
Detecting differential usage of exons from RNA-seq data S Anders, A Reyes, W Huber Nature Precedings, 1-1, 2012 | 1061 | 2012 |
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor S Anders, DJ McCarthy, Y Chen, M Okoniewski, GK Smyth, W Huber, ... Nature protocols 8 (9), 1765, 2013 | 967 | 2013 |
Accounting for technical noise in single-cell RNA-seq experiments P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ... Nature methods 10 (11), 1093-1095, 2013 | 677 | 2013 |
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data M Morgan, S Anders, M Lawrence, P Aboyoun, H Pages, R Gentleman Bioinformatics 25 (19), 2607-2608, 2009 | 391 | 2009 |
Differential expression of RNA-Seq data at the gene level–the DESeq package S Anders, W Huber Heidelberg, Germany: European Molecular Biology Laboratory (EMBL) 10 …, 2012 | 368 | 2012 |
Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements K Zarnack, J König, M Tajnik, I Martincorena, S Eustermann, I Stévant, ... Cell 152 (3), 453-466, 2013 | 304 | 2013 |
Differential analysis of count data–the DESeq2 package M Love, S Anders, W Huber Genome Biol 15 (550), 10.1186, 2014 | 284 | 2014 |
RNA-Seq workflow: gene-level exploratory analysis and differential expression MI Love, S Anders, V Kim, W Huber F1000Research 4, 2015 | 187 | 2015 |
HTSeq: Analysing high-throughput sequencing data with Python S Anders, PT Pyl, W Huber | 128 | 2010 |
Analysing RNA-Seq data with the DESeq package S Anders Mol Biol 43 (4), 1-17, 2010 | 124 | 2010 |
Genome-wide analysis of mRNA decay patterns during early Drosophiladevelopment S Thomsen, S Anders, SC Janga, W Huber, CR Alonso Genome biology 11 (9), R93, 2010 | 119 | 2010 |
Fast simulation of stabilizer circuits using a graph-state representation S Anders, HJ Briegel Physical Review A 73 (2), 022334, 2006 | 110 | 2006 |
Gene expression across mammalian organ development M Cardoso-Moreira, J Halbert, D Valloton, B Velten, C Chen, Y Shao, ... Nature 571 (7766), 505-509, 2019 | 107 | 2019 |
An efficient method for genome-wide polyadenylation site mapping and RNA quantification S Wilkening, V Pelechano, AI Järvelin, MM Tekkedil, S Anders, V Benes, ... Nucleic acids research 41 (5), e65-e65, 2013 | 103 | 2013 |
Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions A Schlattl, S Anders, SM Waszak, W Huber, JO Korbel Genome research 21 (12), 2004-2013, 2011 | 103 | 2011 |
Quiescence modulates stem cell maintenance and regenerative capacity in the aging brain G Kalamakis, D Brüne, S Ravichandran, J Bolz, W Fan, F Ziebell, T Stiehl, ... Cell 176 (6), 1407-1419. e14, 2019 | 80 | 2019 |