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Tyson R. Shepherd
Tyson R. Shepherd
Inscripta Inc.
Verified email at inscripta.com - Homepage
Title
Cited by
Cited by
Year
Role of nanoscale antigen organization on B-cell activation probed using DNA origami
R Veneziano, TJ Moyer, MB Stone, EC Wamhoff, BJ Read, S Mukherjee, ...
Nature nanotechnology 15 (8), 716-723, 2020
2862020
Autonomously designed free-form 2D DNA origami
H Jun, F Zhang, T Shepherd, S Ratanalert, X Qi, H Yan, M Bathe
Science advances 5 (1), eaav0655, 2019
1442019
Automated sequence design of 3D polyhedral wireframe DNA origami with honeycomb edges
H Jun, TR Shepherd, K Zhang, WP Bricker, S Li, W Chiu, M Bathe
ACS nano 13 (2), 2083-2093, 2019
1122019
In vitro synthesis of gene-length single-stranded DNA
R Veneziano, TR Shepherd, S Ratanalert, L Bellou, C Tao, M Bathe
Scientific reports 8 (1), 6548, 2018
872018
Random access DNA memory using Boolean search in an archival file storage system
JL Banal, TR Shepherd, J Berleant, H Huang, M Reyes, CM Ackerman, ...
Nature materials 20 (9), 1272-1280, 2021
812021
A novel pathway spatiotemporally activates Rac1 and redox signaling in response to fluid shear stress
Y Liu, C Collins, WB Kiosses, AM Murray, M Joshi, TR Shepherd, ...
Journal of Cell Biology 201 (6), 863-873, 2013
752013
The Tiam1 PDZ domain couples to Syndecan1 and promotes cell–matrix adhesion
TR Shepherd, SM Klaus, X Liu, S Ramaswamy, KA DeMali, EJ Fuentes
Journal of molecular biology 398 (5), 730-746, 2010
692010
Programming structured DNA assemblies to probe biophysical processes
EC Wamhoff, JL Banal, WP Bricker, TR Shepherd, MF Parsons, ...
Annual review of biophysics 48, 395-419, 2019
622019
Bioproduction of pure, kilobase-scale single-stranded DNA
TR Shepherd, RR Du, H Huang, EC Wamhoff, M Bathe
Scientific Reports 9 (1), 6121, 2019
472019
The structure of the Tiam1 PDZ domain/phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics
X Liu, TR Shepherd, AM Murray, Z Xu, EJ Fuentes
Structure 21 (3), 342-354, 2013
472013
Distinct ligand specificity of the Tiam1 and Tiam2 PDZ domains
TR Shepherd, RL Hard, AM Murray, D Pei, EJ Fuentes
Biochemistry 50 (8), 1296-1308, 2011
452011
De novo design and synthesis of a 30-cistron translation-factor module
TR Shepherd, L Du, J Liljeruhm, Samudyata, J Wang, MOD Sjödin, ...
Nucleic acids research 45 (18), 10895-10905, 2017
362017
Structural and functional insights into the molecular mechanism of rRNA m6A methyltransferase RlmJ
AS Punekar, J Liljeruhm, TR Shepherd, AC Forster, M Selmer
Nucleic acids research 41 (20), 9537-9548, 2013
322013
Distinct roles for conformational dynamics in protein-ligand interactions
X Liu, DC Speckhard, TR Shepherd, YJ Sun, SR Hengel, L Yu, CA Fowler, ...
Structure 24 (12), 2053-2066, 2016
302016
Structural and Thermodynamic Analysis of PDZ–Ligand Interactions
TR Shepherd, EJ Fuentes
Methods in enzymology 488, 81-100, 2011
222011
Crystal structure of RlmM, the 2′O-ribose methyltransferase for C2498 of Escherichia coli 23S rRNA
AS Punekar, TR Shepherd, J Liljeruhm, AC Forster, M Selmer
Nucleic acids research 40 (20), 10507-10520, 2012
142012
3D RNA-scaffolded wireframe origami
MF Parsons, MF Allan, S Li, TR Shepherd, S Ratanalert, K Zhang, ...
Nature Communications 14 (1), 382, 2023
132023
Microbial production of pure single stranded nucleic acids
T Shepherd, R Du, M Bathe
US Patent 10,940,171, 2021
122021
Conformational dynamics and cooperativity drive the specificity of a protein-ligand interaction
X Liu, LC Golden, JA Lopez, TR Shepherd, L Yu, EJ Fuentes
Biophysical journal 116 (12), 2314-2330, 2019
102019
Disrupting the ArcA regulatory network amplifies the fitness cost of tetracycline resistance in Escherichia coli
ML Arrieta-Ortiz, M Pan, A Kaur, E Pepper-Tunick, V Srinivas, A Dash, ...
Msystems 8 (1), e00904-22, 2023
62023
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