Martin Tompa
TitleCited byYear
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137, 2005
14412005
Finding motifs using random projections
J Buhler, M Tompa
Journal of computational biology 9 (2), 225-242, 2002
7332002
Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis
HD Park, KM Guinn, MI Harrell, R Liao, MI Voskuil, M Tompa, ...
Molecular microbiology 48 (3), 833-843, 2003
6612003
How to share a secret with cheaters
M Tompa, H Woll
journal of Cryptology 1 (3), 133-138, 1989
5241989
Discovery of regulatory elements by a computational method for phylogenetic footprinting
M Blanchette, M Tompa
Genome research 12 (5), 739-748, 2002
3982002
Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis
PF Cliften, LDW Hillier, L Fulton, T Graves, T Miner, WR Gish, ...
Genome research 11 (7), 1175-1186, 2001
3222001
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline
Z Weinberg, JE Barrick, Z Yao, A Roth, JN Kim, J Gore, JX Wang, ER Lee, ...
Nucleic acids research 35 (14), 4809-4819, 2007
2932007
YMF: a program for discovery of novel transcription factor binding sites by statistical overrepresentation
S Sinha, M Tompa
Nucleic acids research 31 (13), 3586-3588, 2003
2902003
Random self-reducibility and zero knowledge interactive proofs of possession of information
M Tompa, H Woll
28th Annual Symposium on Foundations of Computer Science (sfcs 1987), 472-482, 1987
2891987
Discovery of novel transcription factor binding sites by statistical overrepresentation
S Sinha, M Tompa
Nucleic acids research 30 (24), 5549-5560, 2002
2792002
A statistical method for finding transcription factor binding sites.
S Sinha, M Tompa
ISMB 8, 344-354, 2000
2752000
PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences
S Sinha, M Blanchette, M Tompa
BMC bioinformatics 5 (1), 170, 2004
2372004
An exact method for finding short motifs in sequences, with application to the ribosome binding site problem.
M Tompa
ISMB 99, 262-271, 1999
2341999
Algorithms for phylogenetic footprinting
M Blanchette, B Schwikowski, M Tompa
Journal of computational biology 9 (2), 211-223, 2002
2312002
FootPrinter: a program designed for phylogenetic footprinting
M Blanchette, M Tompa
Nucleic acids research 31 (13), 3840-3842, 2003
2162003
Space-bounded hierarchies and probabilistic computations
WL Ruzzo, J Simon, M Tompa
Journal of Computer and System Sciences 28 (2), 216-230, 1984
1641984
Two applications of inductive counting for complementation problems
A Borodin, SA Cook, PW Dymond, WL Ruzzo, M Tompa
SIAM Journal on Computing 18 (3), 559-578, 1989
1571989
Evolutionarily conserved sequence elements that positively regulate IFN-γ expression in T cells
M Shnyreva, WM Weaver, M Blanchette, SL Taylor, M Tompa, ...
Proceedings of the National Academy of Sciences 101 (34), 12622-12627, 2004
1472004
A linear time algorithm for finding all maximal scoring subsequences.
WL Ruzzo, M Tompa
ISMB 99, 234-241, 1999
1471999
A time-space tradeoff for sorting on non-oblivious machines
A Borodin, MJ Fischer, DG Kirkpatrick, NA Lynch, M Tompa
20th Annual Symposium on Foundations of Computer Science (sfcs 1979), 319-327, 1979
1221979
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Articles 1–20