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Yair Augusto Gutiérrez Fosado
Yair Augusto Gutiérrez Fosado
Verified email at sms.ed.ac.uk - Homepage
Title
Cited by
Cited by
Year
Coarse-grained simulation of DNA using LAMMPS: An implementation of the oxDNA model and its applications
O Henrich, YA Gutiérrez Fosado, T Curk, TE Ouldridge
The European Physical Journal E 41, 1-16, 2018
622018
A single nucleotide resolution model for large-scale simulations of double stranded DNA
YAG Fosado, D Michieletto, J Allan, CA Brackley, O Henrich, ...
Soft Matter 12 (47), 9458-9470, 2016
242016
Nonequilibrium dynamics and action at a distance in transcriptionally driven DNA supercoiling
YAG Fosado, D Michieletto, CA Brackley, D Marenduzzo
Proceedings of the National Academy of Sciences 118 (10), e1905215118, 2021
192021
Dynamical scaling and phase coexistence in topologically constrained DNA melting
YAG Fosado, D Michieletto, D Marenduzzo
Physical Review Letters 119 (11), 118002, 2017
142017
Twist dynamics and buckling instability of ring DNA: the effect of groove asymmetry and anisotropic bending
YAG Fosado, F Landuzzi, T Sakaue
Soft Matter 17 (6), 1530-1537, 2021
102021
Coarse graining dna: Symmetry, nonlocal elasticity, and persistence length
YA Gutiérrez Fosado, F Landuzzi, T Sakaue
Physical Review Letters 130 (5), 058402, 2023
92023
Dynamic and facilitated binding of topoisomerase accelerates topological relaxation
D Michieletto, YAG Fosado, E Melas, M Baiesi, L Tubiana, E Orlandini
Nucleic Acids Research 50 (8), 4659-4668, 2022
62022
Topological elasticity in physical gels with limited valence
G Palombo, S Weir, D Michieletto, YAG Fosado
arXiv preprint arXiv:2308.09689, 2023
52023
Fluidification of entanglements by a DNA bending protein
YAG Fosado, J Howard, S Weir, A Noy, MC Leake, D Michieletto
Physical Review Letters 130 (5), 058203, 2023
52023
Geometric Predictors of Knotted and Linked Arcs
JL Sleiman, RH Burton, M Caraglio, YA Gutierrez Fosado, D Michieletto
ACS Polymers Au 2 (5), 341-350, 2022
52022
Life Beyond—a program to use astrobiology to teach science and advance space exploration through prisons
CS Cockell, YAG Fosado, J Hitchen, H Landenmark, L Perera, T Vissers
Journal of Correctional Education (1974-) 69 (1), 30-43, 2018
52018
Single-molecule morphology of topologically digested olympic networks
S Ramakrishnan, Z Chen, YAG Fosado, L Tubiana, W Vanderlinden, ...
PRX Life 2 (1), 013009, 2024
42024
Runaway transition in irreversible polymer condensation with cyclization
M Panoukidou, S Weir, V Sorichetti, YG Fosado, M Lenz, D Michieletto
Physical Review Research 6 (2), 023189, 2024
32024
Geometric learning of knot topology
JL Sleiman, F Conforto, YAG Fosado, D Michieletto
Soft Matter 20 (1), 71-78, 2024
32024
Entangled nematic disclinations using multi-particle collision dynamics
LC Head, YAG Fosado, D Marenduzzo, TN Shendruk
arXiv preprint arXiv:2404.09368, 2024
22024
Programmed Self-Assembly of DNA Nanosheets with Discrete Single-Molecule Thickness and Interfacial Mechanics: Design, Simulation, and Characterization
K Cervantes-Salguero, YA Gutiérrez Fosado, W Megone, JE Gautrot, ...
Molecules 28 (9), 3686, 2023
22023
A numerical study of three-armed DNA hydrogel structures
YAG Fosado, Z Xing, E Eiser, M Hudek, O Henrich
arXiv preprint arXiv:1903.04186, 2019
22019
Active Fluidification of Entangled Polymers by Loop Extrusion
F Conforto, YAG Fosado, D Michieletto
arXiv preprint arXiv:2401.17232, 2024
12024
Nanostars planarity modulates the elasticity of DNA hydrogels
YAG Fosado
arXiv preprint arXiv:2202.06331, 2022
12022
Transcription-driven DNA Supercoiling: Non-Equilibrium Dynamics and Action-at-a-distance
YAG Fosado, D Michieletto, CA Brackley, D Marenduzzo
arXiv preprint arXiv:1906.03287, 2019
12019
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