Romain Lopez
Title
Cited by
Cited by
Year
Deep generative modeling for single-cell transcriptomics
R Lopez, J Regier, MB Cole, MI Jordan, N Yosef
Nature Methods 15 (12), 1053-1058, 2018
2922018
Scrublet: computational identification of cell doublets in single-cell transcriptomic data
SL Wolock, R Lopez, AM Klein
Cell Systems, 357368, 2019
2062019
Information Constraints on Auto-Encoding Variational Bayes
R Lopez, J Regier, N Yosef, MI Jordan
Advances in Neural Information Processing Systems, 2018
402018
Probabilistic harmonization and annotation of single-cell transcriptomics data with deep generative models
C Xu, R Lopez, E Mehlman, J Regier, MI Jordan, N Yosef
Molecular Systems Biology (in press), 2020
16*2020
A joint model of unpaired data from scRNA-seq and spatial transcriptomics for imputing missing gene expression measurements
R Lopez, A Nazaret, M Langevin, J Samaran, J Regier, MI Jordan, ...
ICML workshop in Computational Biology, 2019
92019
A deep generative model for gene expression profiles from single-cell RNA sequencing
R Lopez, J Regier, M Cole, M Jordan, N Yosef
Bay Area Machine Learning Symposium, arXiv preprint arXiv:1709.02082, 2017
82017
A deep generative model for single-cell RNA sequencing with application to detecting differentially expressed genes
R Lopez, J Regier, M Cole, M Jordan, N Yosef
NIPS workshop: Machine Learning in Computational Biology, arXiv preprint†…, 2017
62017
Enhancing scientific discoveries in molecular biology with deep generative models
R Lopez, A Gayoso, N Yosef
Molecular Systems Biology 16 (9), e9198, 2020
42020
Cost-Effective Incentive Allocation via Structured Counterfactual Inference
R Lopez, C Li, X Yan, J Xiong, MI Jordan, Y Qi, L Song
AAAI Conference on Artificial Intelligence, 2020
32020
Decision-Making with Auto-Encoding Variational Bayes
R Lopez, P Boyeau, N Yosef, MI Jordan, J Regier
Advances in Neural Information Processing Systems, 2020
22020
Joint probabilistic modeling of paired transcriptome and proteome measurements in single cells
A Gayoso, Z Steier, R Lopez, J Regier, KL Nazor, A Streets, N Yosef
Nature Methods (in press), 2020
22020
A Joint Model of RNA Expression and Surface Protein Abundance in Single Cells
A Gayoso, R Lopez, Z Steier, J Regier, A Streets, N Yosef
Machine Learning in Computational Biology (MLCB) meeting, 2019
22019
Deep Generative Models for Detecting Differential Expression in Single Cells
P Boyeau, R Lopez, J Regier, A Gayoso, MI Jordan, N Yosef
Machine Learning in Computational Biology (MLCB) meeting, 2019
22019
A Deep Generative Model for Semi-Supervised Classification with Noisy Labels
M Langevin, E Mehlman, J Regier, R Lopez, MI Jordan, N Yosef
Bay Area Machine Learning Symposium, arXiv preprint arXiv:1809.05957, 2018
22018
Detecting Zero-Inflated Genes in Single-Cell Transcriptomics Data
O Clivio, R Lopez, J Regier, A Gayoso, MI Jordan, N Yosef
Machine Learning in Computational Biology (MLCB) meeting, 2019
12019
Learning from eXtreme Bandit Feedback
R Lopez, I Dhillon, MI Jordan
AAAI Conference in Artificial Intelligence, 2021
2021
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Articles 1–16