Ignacio Arganda-Carreras

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	All	Since 2015
Citations	28214	26193
h-index	19	19
i10-index	23	21

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201220132014201520162017201820192020133 568 1096 1614 2406 3610 4951 6475 7129

Co-authors

Johannes SchindelinVerified email at wisc.edu
Verena KaynigHarvard UniversityVerified email at seas.harvard.edu
Albert CardonaHHMI JaneliaVerified email at janelia.hhmi.org
Curtis RuedenUniversity of Wisconsin-MadisonVerified email at wisc.edu
Tobias PietzschCSBD/MPI-CBGVerified email at mpi-cbg.de
Stephan PreibischHHMI Janelia & BIMSB, MDCVerified email at janelia.hhmi.org
Stephan SaalfeldHHMI Janelia Research CampusVerified email at janelia.hhmi.org
Kevin EliceiriDirector, Laboratory for Optical and Computational Instrumentation, University of Wisconsin at MadisonVerified email at wisc.edu
Mark Longair(Previously) Postdoctoral researcher, Institute of Neuroinformatics, Uni / ETH ZürichVerified email at longair.net
Pavel TomancakResearch Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics in DresdenVerified email at mpi-cbg.de
Daniel James WhiteApplications specialist, GE Healthcare, life sciencesVerified email at ge.com
Jean-Yves TinevezResearch engineer, Institut Pasteur, Paris, FranceVerified email at pasteur.fr
H Sebastian SeungProfessor, Princeton Neuroscience Institute and Computer Science Dept.Verified email at princeton.edu
Carlos Ortiz de SolorzanoFull Professor - CIMA - Universidad de NavarraVerified email at unav.es
Carlos Oscar S. SorzanoNational Center of Biotechnology (CSIC)Verified email at cnb.csic.es
Philippe AndreyResearch Director (DR2), Institut National de la Recherche Agronomique (INRA)Verified email at inrae.fr
David LeglandINRAEVerified email at inrae.fr
Jan KybicFaculty of Electrical Engineering, Czech Technical University in PragueVerified email at fel.cvut.cz
Fadi DornaikaIKERBASQUE Research FoundationVerified email at ehu.es
Michael DoubeAssociate Professor, City University of Hong KongVerified email at cityu.edu.hk

Ignacio Arganda-Carreras

Ikerbasque Associate Researcher at University of the Basque Country and DIPC

Verified email at ehu.eus - Homepage

Machine Learning Image Processing Computer Vision Bioimage Analysis Neuroscience


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Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature Methods 9 (7), 676–682, 2012	23372	2012
BoneJ: free and extensible bone image analysis in ImageJ M Doube, MM Kłosowski, I Arganda-Carreras, FP Cordelières, ... Bone 47 (6), 1076-1079, 2010	1374	2010
TrakEM2 software for neural circuit reconstruction A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ... PloS one 7 (6), e38011, 2012	562	2012
Trainable Weka Segmentation: a machine learning tool for microscopy pixel classification I Arganda-Carreras, V Kaynig, C Rueden, KW Eliceiri, J Schindelin, ... Bioinformatics 33 (15), 2424-2426, 2017	536	2017
Serial two-photon tomography for automated ex vivo mouse brain imaging T Ragan, LR Kadiri, KU Venkataraju, K Bahlmann, J Sutin, J Taranda, ... Nature methods 9 (3), 255-258, 2012	425	2012
3D reconstruction of histological sections: Application to mammary gland tissue I Arganda‐Carreras, R Fernández‐González, A Muñoz‐Barrutia, ... Microscopy research and technique 73 (11), 1019-1029, 2010	370	2010
MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ D Legland, I Arganda-Carreras, P Andrey Bioinformatics 32 (22), 3532-3534, 2016	306	2016
Consistent and elastic registration of histological sections using vector-spline regularization I Arganda-Carreras, COS Sorzano, R Marabini, JM Carazo, ... International Workshop on Computer Vision Approaches to Medical Image …, 2006	259	2006
Crowdsourcing the creation of image segmentation algorithms for connectomics I Arganda-Carreras, SC Turaga, DR Berger, D Cireşan, A Giusti, ... Frontiers in neuroanatomy 9, 142, 2015	194	2015
JTinevez, e J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Y., White, DJ, Hartenstein, V., Eliceiri, K., Tomancak, P., and Cardona, A …, 2012	187*	2012
Mapping social behavior-induced brain activation at cellular resolution in the mouse Y Kim, KU Venkataraju, K Pradhan, C Mende, J Taranda, SC Turaga, ... Cell reports 10 (2), 292-305, 2015	172	2015
Vision-Based Fall Detection with Convolutional Neural Networks A Núñez-Marcos, G Azkune, I Arganda-Carreras Wireless Communications and Mobile Computing 2017, 1-16, 2017	72	2017
Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts A Cardona, S Saalfeld, I Arganda-Carreras, W Pereanu, J Schindelin, ... The Journal of Neuroscience 30 (22), 7538-7553, 2010	62	2010
Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling N Miyasaka, I Arganda-Carreras, N Wakisaka, M Masuda, U Sümbül, ... Nature communications 5 (1), 1-14, 2014	45	2014
A generic classification-based method for segmentation of nuclei in 3D images of early embryos J Gul-Mohammed, I Arganda-Carreras, P Andrey, V Galy, T Boudier BMC bioinformatics 15 (1), 9, 2014	34	2014
Phenotyping nematode feeding sites: three‐dimensional reconstruction and volumetric measurements of giant cells induced by root‐knot nematodes in Arabidopsis J Cabrera, FE Díaz‐Manzano, M Barcala, I Arganda‐Carreras, ... New Phytologist 206 (2), 868-880, 2015	28	2015
NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei A Poulet, I Arganda-Carreras, D Legland, AV Probst, P Andrey, C Tatout Bioinformatics 31 (7), 1144-1146, 2015	28	2015
Multicolor multiscale brain imaging with chromatic multiphoton serial microscopy L Abdeladim, KS Matho, S Clavreul, P Mahou, JM Sintes, X Solinas, ... Nature communications 10 (1), 1-14, 2019	19	2019
Trainable Weka segmentation: a machine learning tool for microscopy image segmentation I Arganda-Carreras, V Kaynig, J Schindelin, A Cardona, HS Seung Neuroscience 2014, 73-80, 2014	19	2014
Non-rigid consistent registration of 2D image sequences I Arganda-Carreras, COS Sorzano, P Thévenaz, A Muñoz-Barrutia, ... Physics in Medicine & Biology 55 (20), 6215, 2010	18	2010

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