| Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013 | 713 | 2013 |
| SeqAn an efficient, generic C++ library for sequence analysis A Döring, D Weese, T Rausch, K Reinert BMC bioinformatics 9, 1-9, 2008 | 399 | 2008 |
| RazerS—fast read mapping with sensitivity control D Weese, AK Emde, T Rausch, A Döring, K Reinert Genome research 19 (9), 1646-1654, 2009 | 201 | 2009 |
| RazerS 3: faster, fully sensitive read mapping D Weese, M Holtgrewe, K Reinert Bioinformatics 28 (20), 2592-2599, 2012 | 177 | 2012 |
| Alignment of next-generation sequencing reads K Reinert, B Langmead, D Weese, DJ Evers Annual review of genomics and human genetics 16, 133-151, 2015 | 135 | 2015 |
| Fast and accurate read mapping with approximate seeds and multiple backtracking E Siragusa, D Weese, K Reinert Nucleic acids research 41 (7), e78-e78, 2013 | 117 | 2013 |
| A novel and well-defined benchmarking method for second generation read mapping M Holtgrewe, AK Emde, D Weese, K Reinert BMC bioinformatics 12 (1), 1-10, 2011 | 102 | 2011 |
| The SeqAn C++ template library for efficient sequence analysis: A resource for programmers K Reinert, TH Dadi, M Ehrhardt, H Hauswedell, S Mehringer, R Rahn, ... Journal of biotechnology 261, 157-168, 2017 | 93 | 2017 |
| Fiona: a parallel and automatic strategy for read error correction MH Schulz, D Weese, M Holtgrewe, V Dimitrova, S Niu, K Reinert, ... Bioinformatics 30 (17), i356-i363, 2014 | 82 | 2014 |
| Segment-based multiple sequence alignment T Rausch, AK Emde, D Weese, A Döring, C Notredame, K Reinert Bioinformatics 24 (16), i187-i192, 2008 | 78 | 2008 |
| Detecting genomic indel variants with exact breakpoints in single-and paired-end sequencing data using SplazerS AK Emde, MH Schulz, D Weese, R Sun, M Vingron, VM Kalscheuer, ... Bioinformatics 28 (5), 619-627, 2012 | 77 | 2012 |
| A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads T Rausch, S Koren, G Denisov, D Weese, AK Emde, A Döring, K Reinert Bioinformatics 25 (9), 1118-1124, 2009 | 56 | 2009 |
| MicroRazerS: rapid alignment of small RNA reads AK Emde, M Grunert, D Weese, K Reinert, SR Sperling Bioinformatics 26 (1), 123-124, 2010 | 51 | 2010 |
| CIDANE: comprehensive isoform discovery and abundance estimation S Canzar, S Andreotti, D Weese, K Reinert, GW Klau Genome biology 17 (1), 1-18, 2016 | 48 | 2016 |
| STELLAR: fast and exact local alignments B Kehr, D Weese, K Reinert BMC bioinformatics 12 (9), 1-12, 2011 | 42 | 2011 |
| Fast and adaptive variable order Markov chain construction MH Schulz, D Weese, T Rausch, A Döring, K Reinert, M Vingron Algorithms in Bioinformatics: 8th International Workshop, WABI 2008 …, 2008 | 38 | 2008 |
| Journaled string tree—a scalable data structure for analyzing thousands of similar genomes on your laptop R Rahn, D Weese, K Reinert Bioinformatics 30 (24), 3499-3505, 2014 | 36 | 2014 |
| Efficient string mining under constraints via the deferred frequency index D Weese, MH Schulz Advances in Data Mining. Medical Applications, E-Commerce, Marketing, and …, 2008 | 24* | 2008 |
| Model-based image processing using snakes and mutual information S von Klinski, C Derz, D Weese, T Tolxdorff Medical Imaging 2000: Image Processing 3979, 1053-1064, 2000 | 18 | 2000 |
| Entwurf und Implementierung eines generischen Substring-Index D Weese Humboldt University of Berlin, 2006 | 9 | 2006 |
Knut ReinertFU Berlin / MPI MolgenVerified email at fu-berlin.de
