Current methods of gene prediction, their strengths and weaknesses C Mathé, MF Sagot, T Schiex, P Rouzé Nucleic acids research 30 (19), 4103-4117, 2002 | 573 | 2002 |
Applied combinatorics on words M Lothaire Cambridge Univ Pr, 2005 | 526 | 2005 |
Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification L Marsan, MF Sagot Journal of computational biology 7 (3-4), 345-362, 2000 | 330 | 2000 |
Spelling approximate repeated or common motifs using a suffix tree MF Sagot Latin American Symposium on Theoretical Informatics, 374-390, 1998 | 330 | 1998 |
Current tools for the identification of miRNA genes and their targets ND Mendes, AT Freitas, MF Sagot Nucleic acids research 37 (8), 2419-2433, 2009 | 262 | 2009 |
Motif search in graphs: application to metabolic networks V Lacroix, CG Fernandes, MF Sagot IEEE/ACM Transactions on Computational Biology and Bioinformatics 3 (4), 360-368, 2006 | 217 | 2006 |
MeDuSa: a multi-draft based scaffolder E Bosi, B Donati, M Galardini, S Brunetti, MF Sagot, P Lió, P Crescenzi, ... Bioinformatics 31 (15), 2443-2451, 2015 | 198 | 2015 |
Lecture notes in computer science (including subseries lecture notes in artificial intelligence and lecture notes in bioinformatics): Preface M Abe, K Aoki, G Ateniese, R Avanzi, Z Beerliová, O Billet, A Biryukov, ... Lecture Notes in Computer Science (including subseries Lecture Notes in …, 2006 | 174* | 2006 |
An introduction to metabolic networks and their structural analysis V Lacroix, L Cottret, P Thébault, MF Sagot IEEE/ACM transactions on computational biology and bioinformatics 5 (4), 594-617, 2008 | 172 | 2008 |
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks L Cottret, D Wildridge, F Vinson, MP Barrett, H Charles, MF Sagot, ... Nucleic acids research 38 (suppl_2), W132-W137, 2010 | 159 | 2010 |
Advances on sorting by reversals E Tannier, A Bergeron, MF Sagot Discrete Applied Mathematics 155 (6-7), 881-888, 2007 | 150 | 2007 |
Inferring regulatory elements from a whole genome. An analysis of Helicobacter pyloriσ80 family of promoter signals A Vanet, L Marsan, A Labigne, MF Sagot Journal of molecular biology 297 (2), 335-353, 2000 | 124 | 2000 |
RISOTTO: Fast Extraction of Motifs with Mismatches N Pisanti, AM Carvalho, L Marsan, MF Sagot Latin American Symposium on Theoretical Informatics, 757-768, 2006 | 123 | 2006 |
Extracting structured motifs using a suffix tree—algorithms and application to promoter consensus identification L Marsan, MF Sagot Proceedings of the fourth annual international conference on Computational …, 2000 | 123 | 2000 |
Modes and cuts in metabolic networks: Complexity and algorithms V Acuna, F Chierichetti, V Lacroix, A Marchetti-Spaccamela, MF Sagot, ... Biosystems 95 (1), 51-60, 2009 | 119 | 2009 |
Sorting by reversals in subquadratic time E Tannier, MF Sagot Annual Symposium on Combinatorial Pattern Matching, 1-13, 2004 | 117 | 2004 |
K is s plice: de-novo calling alternative splicing events from rna-seq data GAT Sacomoto, J Kielbassa, R Chikhi, R Uricaru, P Antoniou, MF Sagot, ... BMC bioinformatics 13 (6), 1-12, 2012 | 107 | 2012 |
Promoter sequences and algorithmical methods for identifying them A Vanet, L Marsan, MF Sagot Research in Microbiology 150 (9-10), 779-799, 1999 | 104 | 1999 |
Wolbachia detection: an assessment of standard PCR Protocols PM Simoes, G Mialdea, D Reiss, MF Sagot, S Charlat Molecular Ecology Resources 11 (3), 567-572, 2011 | 83 | 2011 |
Footprints of inversions at present and past pseudoautosomal boundaries in human sex chromosomes C Lemaitre, MDV Braga, C Gautier, MF Sagot, E Tannier, GAB Marais Genome biology and evolution 1, 56-66, 2009 | 80 | 2009 |