Paul Bastide
Paul Bastide
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PhyloNetworks: a package for phylogenetic networks
C Solís-Lemus, P Bastide, C Ané
Molecular biology and evolution 34 (12), 3292-3298, 2017
Inference of adaptive shifts for multivariate correlated traits
P Bastide, C Ané, S Robin, M Mariadassou
Systematic Biology 67 (4), 662-680, 2018
Phylogenetic comparative methods on phylogenetic networks with reticulations
P Bastide, C Solís-Lemus, R Kriebel, K William Sparks, C Ané
Systematic biology 67 (5), 800-820, 2018
Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework
S Dellicour, S Lequime, B Vrancken, MS Gill, P Bastide, K Gangavarapu, ...
Nature communications 11 (1), 5620, 2020
Detection of adaptive shifts on phylogenies using shifted stochastic processes on a tree
P Bastide, M Mariadassou, S Robin
Journal of the Royal Statistical Society: Series B (Statistical Methodology …, 2017
Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models
Z Zhang, A Nishimura, P Bastide, X Ji, RP Payne, P Goulder, P Lemey, ...
nosoi: A stochastic agent‐based transmission chain simulation framework in r
S Lequime, P Bastide, S Dellicour, P Lemey, G Baele
Methods in ecology and evolution 11 (8), 1002-1007, 2020
Multiple factors behind early diversification of skull morphology in the continental radiation of New World monkeys
L Aristide, P Bastide, SF Dos Reis, TM Pires dos Santos, RT Lopes, ...
Evolution 72 (12), 2697-2711, 2018
Efficient Bayesian inference of general Gaussian models on large phylogenetic trees
P Bastide, LST Ho, G Baele, P Lemey, MA Suchard
The Annals of Applied Statistics 15 (2), 971-997, 2021
Markov-modulated continuous-time Markov chains to identify site-and branch-specific evolutionary variation in BEAST
G Baele, MS Gill, P Bastide, P Lemey, MA Suchard
Systematic Biology 70 (1), 181-189, 2021
Rivers and landscape ecology of a plant virus, Rice yellow mottle virus along the Niger Valley
S Issaka, O Traoré, RDS Longué, A Pinel-Galzi, MS Gill, S Dellicour, ...
Virus evolution 7 (2), veab072, 2021
The Cauchy process on phylogenies: a tractable model for pulsed evolution
P Bastide, G Didier
Systematic Biology 72 (6), 1296-1315, 2023
A phylogenetic framework to simulate synthetic interspecies RNA-Seq data
P Bastide, C Soneson, DB Stern, O Lespinet, M Gallopin
Molecular Biology and Evolution 40 (1), msac269, 2023
Accounting for within-species variation in continuous trait evolution on a phylogenetic network
B Teo, JP Rose, P Bastide, C Ané
bioRxiv, 2022.05. 12.490814, 2022
Shifted stochastic processes evolving on trees: application to models of adaptive evolution on phylogenies.
P Bastide
Université Paris Saclay (COmUE), 2017
Phylogeographic and phylodynamic approaches to epidemiological hypothesis testing
S Dellicour, S Lequime, B Vrancken, MS Gill, P Bastide, K Gangavarapu, ...
bioRxiv, 788059, 2019
Accounting for intraspecific variation in continuous trait evolution on a reticulate phylogeny
B Teo, J Rose, P Bastide, C Ané
Bulletin of the Society of Systematic Biologists 2 (3), 1-29, 2023
The evolution of Ericaceae flowers and their pollination syndromes at a global scale
R Kriebel, JP Rose, P Bastide, D Jolles, M Reginato, KJ Sytsma
American Journal of Botany 110 (9), e16220, 2023
Detection of orthologous genes with expression shifts linked to nickel hyperaccumulation across Eudicots
M Gallopin, C Drevet, VSG de la Torre, S Jelassi, M Michel, C Ducos, ...
bioRxiv, 2022.09. 28.509953, 2022
Benchmark of Differential Gene Expression Analysis Methods for Inter-species RNA-Seq Data using a Phylogenetic Simulation Framework
P Bastide, C Soneson, O Lespinet, M Gallopin
bioRxiv, 2022.01. 21.476612, 2022
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