Paul Bastide

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Cécile AnéProfessor, Departments of Statistics and of Botany, University of Wisconsin - MadisonVerified email at wisc.edu
Claudia Solís-LemusUniversity of Wisconsin-MadisonVerified email at wisc.edu
Philippe LemeyAssociate Professor, KU LeuvenVerified email at kuleuven.be
Stéphane ROBINSorbonne universitéVerified email at sorbonne-universite.fr
Mahendra MariadassouINRAE MaiAGE, COSTNET CA15109Verified email at inrae.fr
Marc A. SuchardProfessor, University of California, Los AngelesVerified email at ucla.edu
Guy BaeleAssistant Professor, KU LeuvenVerified email at kuleuven.be
Simon DellicourUniversity of Bruxelles (ULB), University of Leuven (KU Leuven)Verified email at ulb.ac.be
Sebastian LequimeAssistant Professor, University of GroningenVerified email at rug.nl
Martha NelsonNIHVerified email at mail.nih.gov
Nathan D GrubaughAssociate Professor, Yale School of Public HealthVerified email at yale.edu
Oliver PybusUniversity of Oxford / Royal Veterinary CollegeVerified email at zoo.ox.ac.uk
Kristian G AndersenThe Scripps Research InstituteVerified email at scripps.edu
Karthik GangavarapuUniversity of California, Los AngelesVerified email at scripps.edu
Akihiko NishimuraJohns Hopkins, Department of BiostatisticsVerified email at jhu.edu
Leandro AristidePostdoctoral researcher, Intitute of Evolutionary Biology (IBE-UPF-CSIC), BarcelonaVerified email at biologie.ens.fr
Sergio Ivan PerezFacultad de Ciencias Naturales y Museo. Universidad Nacional de La PlataVerified email at fcnym.unlp.edu.ar
Lam Si Tung HoAssistant Professor, Department of Mathematics and Statistics, Dalhousie UniversityVerified email at dal.ca
Ricardo Kriebel
Xiang JiDepartment of Computer Science, New Jersey Institute of TechnologyVerified email at njit.edu

Paul Bastide

Université de Montpellier

Verified email at umontpellier.fr - Homepage

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PhyloNetworks: a package for phylogenetic networks C Solís-Lemus, P Bastide, C Ané Molecular biology and evolution 34 (12), 3292-3298, 2017	159	2017
Phylogenetic comparative methods on phylogenetic networks with reticulations P Bastide, C Solís-Lemus, R Kriebel, K William Sparks, C Ané Systematic biology 67 (5), 800-820, 2018	60	2018
Inference of adaptive shifts for multivariate correlated traits P Bastide, C Ané, S Robin, M Mariadassou Systematic Biology 67 (4), 662-680, 2018	59	2018
Detection of adaptive shifts on phylogenies using shifted stochastic processes on a tree P Bastide, M Mariadassou, S Robin Journal of the Royal Statistical Society: Series B (Statistical Methodology …, 2017	33	2017
`nosoi`: A stochastic agent‐based transmission chain simulation framework in r S Lequime, P Bastide, S Dellicour, P Lemey, G Baele Methods in ecology and evolution 11 (8), 1002-1007, 2020	14	2020
Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models Z Zhang, A Nishimura, P Bastide, X Ji, RP Payne, P Goulder, P Lemey, ... The Annals of Applied Statistics 15 (1), 230-251, 2021	12	2021
Multiple factors behind early diversification of skull morphology in the continental radiation of New World monkeys L Aristide, P Bastide, SF Dos Reis, TM Pires dos Santos, RT Lopes, ... Evolution 72 (12), 2697-2711, 2018	11	2018
Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework S Dellicour, S Lequime, B Vrancken, MS Gill, P Bastide, K Gangavarapu, ... Nature communications 11 (1), 1-11, 2020	10	2020
Markov-modulated continuous-time Markov chains to identify site-and branch-specific evolutionary variation in BEAST G Baele, MS Gill, P Bastide, P Lemey, MA Suchard Systematic biology 70 (1), 181-189, 2021	6	2021
Efficient Bayesian inference of general Gaussian models on large phylogenetic trees P Bastide, LST Ho, G Baele, P Lemey, MA Suchard arXiv preprint arXiv:2003.10336, 2020	4	2020
Shifted stochastic processes evolving on trees: application to models of adaptive evolution on phylogenies. P Bastide Université Paris Saclay (COmUE), 2017	3	2017
Phylogeographic and phylodynamic approaches to epidemiological hypothesis testing S Dellicour, S Lequime, B Vrancken, MS Gill, P Bastide, K Gangavarapu, ... bioRxiv, 788059, 2020	2	2020
Accounting for intraspecific variation in continuous trait evolution on a reticulate phylogeny BS Teo, J Rose, P Bastide, C Ane bioRxiv, 2022		2022
Benchmark of Differential Gene Expression Analysis Methods for Inter-species RNA-Seq Data using a Phylogenetic Simulation Framework P Bastide, C Soneson, O Lespinet, M Gallopin bioRxiv, 2022		2022
Bayesian Methods for Trait Evolution P Bastide		2021
Stochastic processes on trees: Brownian motion and beyond P Bastide, MD Felipe		2021
The Phylogenetic Regression P Bastide		2021
Phylogenetic comparative methods on species networks P Bastide, C Solís-Lemus, R Kriebel, K Sparks, C Ané 2021 Fall Western Sectional Meeting, 2021		2021
Rivers and landscape ecology of a plant virus, Rice yellow mottle virus along the Niger Valley S Issaka, O Traoré, RDS Longué, A Pinel-Galzi, MS Gill, S Dellicour, ... Virus Evolution 7 (2), veab072, 2021		2021
Software for Systematics and Evolution GUY BAELE, MS GILL, P BASTIDE, P LEMEY, MA SUCHARD Syst. Biol 70 (1), 181-189, 2021		2021

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