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Jonathan Göke
Jonathan Göke
Genome Institute of Singapore
Verified email at gis.a-star.edu.sg - Homepage
Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1670*2020
Midbrain-like organoids from human pluripotent stem cells contain functional dopaminergic and neuromelanin-producing neurons
J Jo, Y Xiao, AX Sun, E Cukuroglu, HD Tran, J Göke, ZY Tan, TY Saw, ...
Cell stem cell 19 (2), 248-257, 2016
7122016
Induction of a human pluripotent state with distinct regulatory circuitry that resembles preimplantation epiblast
YS Chan*, J Göke*, JH Ng*, X Lu, KAU Gonzales, CP Tan, WQ Tng, ...
Cell stem cell 13 (6), 663-675, 2013
4382013
The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity
X Lu, F Sachs, LA Ramsay, PÉ Jacques, J Göke, G Bourque, HH Ng
Nature structural & molecular biology 21 (4), 423-425, 2014
4352014
Dynamic transcription of distinct classes of endogenous retroviral elements marks specific populations of early human embryonic cells
J Göke, X Lu, YS Chan, HH Ng, LH Ly, F Sachs, I Szczerbinska
Cell stem cell 16 (2), 135-141, 2015
3392015
X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes
H Hu, SA Haas, J Chelly, H Van Esch, M Raynaud, APM de Brouwer, ...
Molecular psychiatry 21 (1), 133-148, 2016
3042016
Genomic basis for RNA alterations in cancer
PCAWG Transcriptome Core Group Calabrese Claudia 2 Davidson Natalie R. 3 4 5 ...
Nature 578 (7793), 129-136, 2020
2932020
Reduced Oct4 expression directs a robust pluripotent state with distinct signaling activity and increased enhancer occupancy by Oct4 and Nanog
V Karwacki-Neisius, J Göke, R Osorno, F Halbritter, JH Ng, AY Weiße, ...
Cell stem cell 12 (5), 531-545, 2013
2102013
Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides
PJ McMurdie, SF Behrens, JA Müller, J Göke, KM Ritalahti, R Wagner, ...
PLoS Genetics 5 (11), e1000714, 2009
1922009
Identification of differential RNA modifications from nanopore direct RNA sequencing with xPore
PN Pratanwanich, F Yao, Y Chen, CWQ Koh, YK Wan, C Hendra, P Poon, ...
Nature biotechnology 39 (11), 1394-1402, 2021
166*2021
A pan-cancer transcriptome analysis reveals pervasive regulation through alternative promoters
D Demircioğlu, E Cukuroglu, M Kindermans, T Nandi, C Calabrese, ...
Cell 178 (6), 1465-1477. e17, 2019
1622019
Klf2 is an essential factor that sustains ground state pluripotency
JC Yeo, J Jiang, ZY Tan, GR Yim, JH Ng, J Göke, P Kraus, H Liang, ...
Cell stem cell 14 (6), 864-872, 2014
1422014
Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers
L Wratten, A Wilm, J Göke
Nature methods 18 (10), 1161-1168, 2021
1292021
Tumor-associated B cells and humoral immune response in head and neck squamous cell carcinoma
A Lechner, HA Schlößer, M Thelen, K Wennhold, SI Rothschild, R Gilles, ...
Oncoimmunology 8 (3), 1535293, 2019
1162019
Genome-wide kinase-chromatin interactions reveal the regulatory network of ERK signaling in human embryonic stem cells
J Göke, YS Chan, J Yan, M Vingron, HH Ng
Molecular cell 50 (6), 844-855, 2013
1112013
SON connects the splicing-regulatory network with pluripotency in human embryonic stem cells
X Lu*, J Göke*, F Sachs, PÉ Jacques, H Liang, B Feng, G Bourque, ...
Nature cell biology 15 (10), 1141, 2013
1012013
Molecular features underlying neurodegeneration identified through in vitro modeling of genetically diverse Parkinson’s disease patients
L Lin, J Göke, E Cukuroglu, MR Dranias, AMJ VanDongen, LW Stanton
Cell reports 15 (11), 2411-2426, 2016
962016
CTRL+ INSERT: retrotransposons and their contribution to regulation and innovation of the transcriptome
J Göke, HH Ng
EMBO reports 17 (8), 1131-1144, 2016
842016
Zscan4c activates endogenous retrovirus MERVL and cleavage embryo genes
W Zhang, F Chen, R Chen, D Xie, J Yang, X Zhao, R Guo, Y Zhang, ...
Nucleic acids research 47 (16), 8485-8501, 2019
822019
Detection of m6A from direct RNA sequencing using a multiple instance learning framework
C Hendra, PN Pratanwanich, YK Wan, WSS Goh, A Thiery, J Göke
Nature methods 19 (12), 1590-1598, 2022
742022
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